Pinned Repositories
bayonet
bayesian inference of phylogenetic networks
cophycollapse
Parametric unsupervised learning of mosaic evolutionary patterns from quantitative traits
cophymaru
Parametric phylogenetic inference using continuous traits and stratigraphic ranges
fossil_placement_tests
scripts, files, etc, from a paper
GSA2018
hominin_anagenesis
scripts, results, and data from a paper
mandos
calculating likelihoods of stratigraphic and morphologic data on phylogenies
mosaic
scripts, simulated data, etc, from a paper
phylojulia
Phylogenetics and bioinformatics in the Julia language
tomopfuku.github.io
tomopfuku's Repositories
tomopfuku/mandos
calculating likelihoods of stratigraphic and morphologic data on phylogenies
tomopfuku/cophycollapse
Parametric unsupervised learning of mosaic evolutionary patterns from quantitative traits
tomopfuku/cophymaru
Parametric phylogenetic inference using continuous traits and stratigraphic ranges
tomopfuku/hominin_anagenesis
scripts, results, and data from a paper
tomopfuku/mosaic
scripts, simulated data, etc, from a paper
tomopfuku/phylojulia
Phylogenetics and bioinformatics in the Julia language
tomopfuku/tomopfuku.github.io
tomopfuku/bayonet
bayesian inference of phylogenetic networks
tomopfuku/eeb1453h_w2022
tomopfuku/fossil_placement_tests
scripts, files, etc, from a paper
tomopfuku/GSA2018
tomopfuku/Continuous-Trait-Simulations
tomopfuku/continuous_trait_reconstruction
reconstructing phylogeny using continuous traits
tomopfuku/cophyashi
Explorations in the comparative analysis and phylogenetic reconstruction of fossil taxa
tomopfuku/eeb463_assignments
tomopfuku/evolution2017
tomopfuku/gophy
tomopfuku/lagrange-python
extension of DEC model
tomopfuku/mammalian_morphological_clocks
scripts for data processing, analysis, and simulation used in a study investigating signal in Bayesian morphological clock analyses
tomopfuku/multivariate_phylo_shifts
tomopfuku/pf-lab-phylogenetics
starter phylo code for folks