tomthomas300
1st Year DPhil Student KIR/TGU/WCHG - University of Oxford Investigating cellular basis for disease across IBD and rheumatoid arthritis
Oxford, United Kingdom
tomthomas300's Stars
zktuong/ktplots
Some tools for plotting single-cell data
seandavi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
satijalab/seurat
R toolkit for single cell genomics
crazyhottommy/scclusteval
Single Cell Cluster Evaluation
saeyslab/nichenetr
NicheNet: predict active ligand-target links between interacting cells
dpeerlab/Harmony
Harmony framework for connecting scRNA-seq data from discrete time points
cshasha/scRNA-r-python-conversion
Conversion of SingleCellExperiment objects in R Bioconductor to AnnData objects in Scanpy for scRNA-seq analysis.
Teichlab/covid19_MS1
Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".
j-andrews7/awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
elo073/TissStab
Codes for analysing single-cell RNA-sequencing project in Tissue Stability
scverse/anndata
Annotated data.
bburan/NEUS642
Files for NEUS642
theislab/scanpy-in-R
A guide to using the Python scRNA-seq analysis package Scanpy from R
lazappi/phd-thesis-analysis
Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data
crazyhottommy/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
crazyhottommy/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
NBISweden/excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
immunogenomics/notch
Code to reproduce analyses and figures for manuscript: "Synovial fibroblast positional identity controlled by inductive Notch signaling underlies pathologic damage in inflammatory arthritis"
jupyter/jupyter
Jupyter metapackage for installation, docs and chat
jdwittenauer/ipython-notebooks
A collection of IPython notebooks covering various topics.
constantAmateur/SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data