toniher
Bioinformatician and fullstack web developer. Interested in databases and data management systems, MediaWiki, Open Science, etc.
@biocorecrg Barcelona, Catalonia
Pinned Repositories
biomirror
Scripts for mirroring biological data
docker-couchdb-lucene
Docker for CouchDB Lucene
docker-SemanticMediaWiki
Repository for playing with Docker and Semantic MediaWiki
neo4j-biorelation
Neo4j unmanaged extension for retrieving relationships and metrics from biological nodes
perl-bioinformatics
Perl Script for using in Bioinformatics tasks
SemanticDataImport
Extension for importing CSV-like sttuctured data into MediaWiki pages using Semantic MediaWiki
toniher's Repositories
toniher/docker-SemanticMediaWiki
Repository for playing with Docker and Semantic MediaWiki
toniher/biomirror
Scripts for mirroring biological data
toniher/docker-nginx-php
Basic Docker configuration for a NGINX and PHP image
toniher/picamera2-flask
Repository for playing with picamera2 and flask
toniher/BioNextflow
A collection of modules and sub-workflows for Nextflow
toniher/bookdown_test
A simple bookdown test
toniher/catalan-dict-tools
Tools for managing Catalan dictionaries
toniher/docker-R-diffexpr
Docker R image for differential expression analysis
toniher/docker-selfoss
Docker of selfoss RSS reader
toniher/FA-nf
Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
toniher/gogoapi
REST API for handling public and custom biological databases services
toniher/mediawiki-extensions-GoogleTranslator
Repository for customization of Google Translator extension
toniher/MOP2
Master of Pores 2
toniher/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
toniher/nf-core-test-datasets
Test data to be used for automated testing with the nf-core pipelines
toniher/pages
Github Actions for publishing Sphinx HTML output to github pages
toniher/rnaseq-nf
A proof of concept of RNAseq pipeline
toniher/seqservice
NodeJS express API for handling biological sequences
toniher/sphinx-pages
Build html documentation by Sphinx, and push to branch gh-pages.
toniher/telescope-pathogen.nvim
a telescope extension to help you to navigate through different path when using builtin actions from telescope such as `grep_string`, `find_files` and `live_grep`.
toniher/terraform-aws-computation
Terraform module for setting up an AWS computation environment (EC2, S3, Batch, etc.)
toniher/terraform-emr-pyspark
Quickstart PySpark with Anaconda on AWS/EMR using Terraform
toniher/terraform-k8s
HCL scripts for setting up a k8s cluster
toniher/tldr
📚 Collaborative cheatsheets for console commands
toniher/toniher
Toniher profile repo
toniher/user-contribs-classifier
Tools for retrieving reports of users contributions in Wikimedia projects
toniher/vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
toniher/video.js
Video.js - open source HTML5 & Flash video player
toniher/wikidata-catabot
Bots per a utilitzar a Wikidata
toniher/wikidata-pylisting
Scripts per a recuperar dades de Wikidata i combinar-les amb altres API