allele-specific

There are 12 repositories under allele-specific topic.

  • FelixKrueger/SNPsplit

    Allele-specific alignment sorting

    Language:Perl5187319

  • p4rkerw/Wilson_Muto_NComm_2022

    Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

    Language:R12102

  • mskcc/facets2n

    Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations

    Language:R1040

  • churchill-lab/emase-zero

    C++ Implementation of EMASE

    Language:C++61142

  • gimelbrantlab/ASE

    early version of (Pipeline for detection of differential allelic imbalance from RNA-seq)

    Language:HTML6405

  • p4rkerw/SALSA

    Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts

    Language:Shell5111

  • vertesy/X-Reactivation

    Analysis scripts for the Vertesy 2018 paper: "Parental haplotype specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells"

    Language:R230

  • UDC-GAC/PARamrfinder

    PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.

    Language:C++180

  • lancelothk/ASM-Detector

    Tools to analyse allele-specific methylation using bisulfite sequencing data

    Language:Java0110

  • sbresnahan/IGC-CD-SM

    Supplementary Materials for "Intragenomic conflict underlies extreme phenotypic plasticity in queen-worker caste determination in honey bees (Apis mellifera)"

    Language:HTML0100

  • adeschen/GeneiASE_Tools

    R scripts to process input/output related to GeneiASE software

    Language:R20

  • dvera/harp

    Haplotype-Assisted Read Parsing

    Language:R232