antibiotic-resistance
There are 56 repositories under antibiotic-resistance topic.
ncbi/amr
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
nf-core/funcscan
(Meta-)genome screening for functional and natural product gene sequences
will-rowe/groot
A resistome profiler for Graphing Resistance Out Of meTagenomes
pianpianyouche/plascad
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
xinehc/args_oap
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
BigDataBiology/argNorm
ARG normalization by mapping to the ARO ontology.
dmnfarrell/pathogenie
Desktop tool for microbial genome annotation and gene detection
aldro61/patric_tools
Python package to interact with the PATRIC database (https://www.patricbrc.org)
gaarangoa/ARGminer
Curation of Antibiotic Resistance Genes by using crowdsourcing
KiranJavkar/PRAWNS
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
gaarangoa/ExtrARG
Extract discriminatory ARGs from metagenomics samples
aldro61/kover2_paper
Interpretable genotype-to-phenotype models with rule-based classifiers
CaileanCarter/AbxRxPro
Visualise your isolate's antibiotic resistance profile
KarolinaGustavsson/Antibiotics_Chemprop
Antibiotic discovery using graph deep learning, with Chemprop.
joycewang914/Genomic_and_Patient_Transfer_Analyasis_of_Resistant_Bacteria
Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.
Anna-Pico/Antibiotic-resistance-genes-in-metagenomes---TFM
This Github repository contains the files used to perform a master thesis about antibiotic resistance genes in wastewater.
pinheiroGroup/Kinbiont.jl
Ecosystem of numerical methods for microbial kinetics data analysis, from preprocessing to result interpretation.
ryansmcgee/pycrobe
A simple package for simulations of microbial growth experiments with realistic sources of error.
aryanGupta-09/AMROrbit
An antimicrobial resistance (AMR) dashboard.
AstraBert/resistML
A tool for AMR gene family prediction, simple and ML-based
BCCDC-PHL/plasmid-screen
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
dannagifford/multi-resistance
Data, source code and scripts for BIORXIV/2019/643585v3
davidegat/GameOfBacteria
An educational simple game in Italian/English that simulates interaction between antbiotics and bacteria.
Genomic-Medicine-Linkoping/var-genes-ro
Virulence and Antibiotic Resistance Genes used with JASEN pipeline at the university hospital of Linköping, Sweden.
hossainlab/ARGs
Antibiotic Resistance Genes Finding
joycewang914/Microbial_Antibiotic_Network_in_Nursing_Homes
Interaction networks between antibiotic exposure, microbial factors and clinical features in nursing home patients influence the risk of catheter-associated urinary tract infection.
joycewang914/Nursing_Home_Patient_Gut_Microbiota
Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.
Kronopt/SimulATe
Simulator of Antibiotic Therapy Effects on the Dynamics of Bacterial Populations
lasupernova/AMR_chatbot
Natural language processing chatbot answering questions about antibiotics and antibiotic resistance
mbar0075/AntiBio-Advisor
An intelligent interface project targeted towards educating people of different ages about when and why to use antibiotic medication.
Mufle123/ARG_classification
This work is my final thesis for an undergraduate degree in computer science.
NewtonLabUWM/DrinkingWaterPipe_Ecology
Data and code for Kimbell et al., 2021
ZiemertLab/ARTS
Antibiotic Resistant Target Seeker (ARTS)
xinehc/argo
Argo: species-resolved profiling of antibiotic resistant genes in complex metagenomes through long-read overlapping
shliamin/Python-Genome-Assembler
This repository contains a Python-based genome assembler designed to perform k-mer spectrum-based error correction and generate SAM files for visualizing genome mappings. It supports genomic data analysis with a focus on identifying mutations relevant to antibiotic resistance.