will-rowe/groot

Issues

• Card db

  #51 opened 2 months ago by kayobianco
  1

• Abundance table

  #47 opened 5 months ago by mhmism
  2

• Paired-end reads information

  #50 opened 5 months ago by hkaspersen
  2

• GROOT and long reads

  #52 opened 5 months ago by taylorjohnsonm
  1

• panic: k size is greater than sequence length (31 vs 25)

  #54 opened 5 months ago by arpit20328
  1

• Build problem with go-metro while executing the tests

  #53 opened 6 months ago by martin-g
  1

• Problem downloading card database

  #49 opened 3 years ago by wasimbt
  1

• panic: **k size is greater than sequence length (31 vs 29)**

  #48 opened 3 years ago by GomathiNayagam
  1

• Read Count Clarification

  #46 opened 4 years ago by EmilyCrossette
  1

• how to select reasonable ARG result ?

  #44 opened 4 years ago by feihongloveworld
  1

• Error on installation from source

  #45 opened 4 years ago by noellenoyes
  1

• protein database maybe More conservative than DNA

  #43 opened 4 years ago by feihongloveworld
  1

• out of memory error ( > 256 GB)

  #33 opened 5 years ago by rizkg
  4

• groot-db output issues

  #40 opened 5 years ago by LeonardosMageiros
  2

• Groot containment searching

  #34 opened 5 years ago by LeonardosMageiros
  3

• Out-of-memory failure v0.8.6

  #31 opened 5 years ago by EmilyCrossette
  3

• checksum error for CARD

  #30 opened 5 years ago by will-rowe
  2

• Containment not option not present in 0.8.5 on OSX

  #28 opened 5 years ago by dcdanko
  3

• Increase accuracy of containment search seeding (and reduce memory usage)

  #11 opened 5 years ago by boulund
  5

• update databases

  #16 opened 5 years ago by will-rowe
  1

• unhelpful crash message when file in index is empty

  #18 opened 5 years ago by flashton2003
  2

• Trimming and read length?

  #32 opened 5 years ago by Thomieh73
  3

• Building custom database, memory overconsumption.

  #29 opened 5 years ago by Sebastien-Raguideau
  4

• Interpreting output plots

  #27 opened 5 years ago
  4

• encountered error: mean read length is outside the graph window size (+/- 10 bases)

  #24 opened 5 years ago by lancetxiao
  1

• Now in brew

  #26 opened 5 years ago by tseemann
  1

• Get the database error "groot get -d arg-annot"

  #21 opened 5 years ago by lancetxiao
  3

• Could the "groot" be used for the paired-end reads?

  #22 opened 5 years ago by lancetxiao
  1

• ntHash update has broken GROOT

  #20 opened 5 years ago by will-rowe
  1

• option to output GFA during indexing

  #17 opened 6 years ago by will-rowe
  0

• Invalid filename chars in plot pngs

  #15 opened 6 years ago by boulund
  3

• Build command returns error

  #14 opened 6 years ago by grassoste
  2

• Inconsistent results with very similar read length thresholds

  #13 opened 6 years ago by alexmsalmeida
  3

• Encountered error: gob: encoder: message too big

  #10 opened 6 years ago by boulund
  8

• mean read length is outside the graph window size (+/- 10 bases)

  #7 opened 6 years ago by cimendes
  8

• Could not unpack the tarball after downloading the arg-annot database

  #8 opened 6 years ago by ropolomx
  5