will-rowe/groot

update databases

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will-rowe commented

Time to revisit the databases. I think they should now be:

  • downloaded from source, rather than the cloned copies in this repo

  • time stamped or version numbered so that results are reproducible

  • augmented with some recent databases, not just for AMR genes

will-rowe commented

I've enacted this with the latest release (1.0.0). DBs for future releases are now stored under separate directories in /db - ensuring backwards compatibility for groot get / md5s