bacterial
There are 16 repositories under bacterial topic.
assemblerflow/flowcraft
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
nf-core/bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
quwubin/paired-kmers
finding conserved regions in highly diverse genomes
TIBHannover/BacDiveR
Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.
BV-BRC/BV-BRC-Web
The BV-BRC Web Application
daniilidisK/TSSextractR
An R/Shiny Package for Bacterial TSS extraction, using Cappable-seq
NotTheStallion/Computer-vision-in-the-service-of-bacteriology
Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
vrrenske/spotprocessR
code used in van Raaphorst, Kjos & Veening (2017), Chromosome segregation drives division site selection in Streptococcus pneumoniae, PNAS
chris-c-thomas/BV-BRC-Web
The BV-BRC Web Application
JFsanchezherrero/BacDup
Bacterial gene duplication analysis pipeline
AhmedElsherbini/PADLOC_stats
Condense and summarize many results form PADLOC into CSV for heatmaps
MariaDukmak/Staphylococcus-aureus
Curve Growth modeling-IPASS project
MaryAgopian/Variant_Barcoding_M.orygis
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
folkehelseinstituttet/DiscoveryDocker
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
garcia-nacho/DiscoveryDocker
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
thanhleviet/nextflow-shovill
🔗 A simple nextflow of shovill for running multiple samples at once on multiple cores computer or HPC (i.e. slurm, sge,...)