assemblerflow/flowcraft

Issues

• touch: cannot touch '.command.trace': Permission denied

  #142 opened 6 years ago by sjackman
  10

• Add more component

  #236 opened a year ago by ayooluwaB
  0

• bwa gatk not found

  #235 opened 2 years ago by Rohit-Satyam
  0

• Adding to Galaxy?

  #234 opened 3 years ago by ajkarloss
  0

• Integrity coverage fails

  #218 opened 5 years ago by TheSequencingCenter
  15

• Errors when using option -m broadcast

  #232 opened 4 years ago by redbull05689
  1

• Errors with spades

  #233 opened 4 years ago by drpturner
  18

• add ConFindr

  #231 opened 4 years ago by cimendes
  0

• Update processes directives to use selectors.

  #118 opened 6 years ago by ODiogoSilva
  3

• New additions in flowcraft/templates not included/updated after build and install

  #229 opened 5 years ago by parvsachdeva
  0

• Nextflow "set" input has been discontinued

  #228 opened 5 years ago by cimendes
  0

• using my own Docker from Gitlab

  #225 opened 5 years ago by AKWB
  9

• Bash errors when running nextflow with latest version (19.07.0)

  #217 opened 5 years ago by cimendes
  2

• Python3 syntax errors

  #219 opened 5 years ago by t0rrant
  3

• Unable to obtain final report for simple assembly pipeline

  #220 opened 5 years ago by rfm-targa
  1

• Flowcraft report instructions

  #201 opened 5 years ago by jacarrico
  0

• Change docs instructions from using 'templates' as submodule

  #215 opened 5 years ago by cometsong
  1

• Secondary channel for long reads

  #157 opened 6 years ago by sjackman
  11

• generated pipelines incompatible with nextflow's pipeline sharing

  #194 opened 5 years ago by cimendes
  4

• ectyper component

  #203 opened 5 years ago by cimendes
  0

• mobsuite component

  #202 opened 5 years ago by cimendes
  0

• momps, mlst results overwrite when pipeline is resumed

  #195 opened 6 years ago by cimendes
  1

• true_coverage module in innuca recipe

  #193 opened 6 years ago by cimendes
  0

• remove trimmomatic log

  #192 opened 6 years ago by cimendes
  1

• Automatically set local executor CPU limit

  #189 opened 6 years ago by bfrgoncalves
  1

• Add manifest to nextflow.config

  #186 opened 6 years ago by cimendes
  0

• Flowcraft reports and inspect fails when using proxies on nextflow run

  #182 opened 6 years ago by bfrgoncalves
  0

• Merging inspect and report

  #181 opened 6 years ago by jacarrico
  3

• Changing nextflow run params order breaks flowcraft inspect broadcast mode

  #175 opened 6 years ago by bfrgoncalves
  1

• Merging syntax with new operator

  #174 opened 6 years ago by bfrgoncalves
  7

• Missing dockerhub tags for certain components

  #170 opened 6 years ago by ODiogoSilva
  0

• Make component retrieval automatic

  #145 opened 6 years ago by ODiogoSilva
  4

• components version

  #164 opened 6 years ago by tiagofilipe12
  0

• unit tests for scripting templates

  #148 opened 6 years ago by tiagofilipe12
  2

• merge specific params

  #144 opened 6 years ago by tiagofilipe12
  0

• Recipe rework to allow to redefine parameters and directives

  #120 opened 6 years ago by cimendes
  5

• Output assembly graph in GFA format [feature request]

  #137 opened 6 years ago by sjackman
  14

• The 'flowcraft==1.3.0' distribution was not found and is required by the application

  #134 opened 6 years ago by sjackman
  2

• Interleaved paired-end FASTQ file [feature request]

  #136 opened 6 years ago by sjackman
  9

• ERROR ~ No fastq files provided with pattern: 'pe_*.fastq.gz'

  #135 opened 6 years ago by sjackman
  6

• Return Component Parameters

  #99 opened 6 years ago by bfrgoncalves
  1

• failures with integrity_coverage, possibly singularity related

  #102 opened 6 years ago by karinlag
  8

• Overview of failed samples lacks a scroll

  #126 opened 6 years ago by cimendes
  0

• inspect fails

  #114 opened 6 years ago by antunderwood
  21

• remove unused templates while building

  #125 opened 6 years ago by tiagofilipe12
  1

• Inspect fails with KeyError

  #119 opened 6 years ago by ODiogoSilva
  0

• Removal of temporary files only when process terminates succesfully

  #108 opened 6 years ago by ODiogoSilva
  0

• Using pipeline as file does not show resulting pipeline string

  #106 opened 6 years ago by bfrgoncalves
  0

• flowcraft build doesn't throw an error when -o is used incorrectly

  #101 opened 6 years ago by cimendes
  2

• UnicodeEncodeError when running build

  #97 opened 6 years ago by pashadag
  3