Pinned Repositories
ABSTAT17
chewBBACA_tutorial
Step by step tutorial using chewBBACA with all necessary files and results
Coelho2015_NetsDetermination
Reproducible code archive for "Automatic Determination of NET (Neutrophil Extracellular Traps) Coverage in Fluorescent Microscopy Images" by Coelho et al.
ComparingPartitions
Colection of python functions for Partition Comparison - See www.comparingpartitions.info for more information
dwnFTP
Scripts to download data from ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/
ESCMID-MGE-2022
goeBURST
goeBURST in python
MoranSim
sample_fastq
Functions to sample fastq.gz files down to x coverage
jacarrico's Repositories
jacarrico/ComparingPartitions
Colection of python functions for Partition Comparison - See www.comparingpartitions.info for more information
jacarrico/dwnFTP
Scripts to download data from ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/
jacarrico/goeBURST
goeBURST in python
jacarrico/MoranSim
jacarrico/sample_fastq
Functions to sample fastq.gz files down to x coverage
jacarrico/ABSTAT17
jacarrico/chewBBACA_tutorial
Step by step tutorial using chewBBACA with all necessary files and results
jacarrico/Coelho2015_NetsDetermination
Reproducible code archive for "Automatic Determination of NET (Neutrophil Extracellular Traps) Coverage in Fluorescent Microscopy Images" by Coelho et al.
jacarrico/ESCMID-MGE-2022
jacarrico/GrapeTree
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata.
jacarrico/IST_HPC_test
a nextflow pipeline build with flowcraft for genome assembly and QA/QC
jacarrico/jacarrico.github.io
My webpage
jacarrico/MLSTtrimm
Python Scripts for inferring Allele trimming patterns for MLST alleles
jacarrico/moran
D3 Moran Model Simulator
jacarrico/Oneida_Genomics_Workshop
jacarrico/phyloviz.github.io
jacarrico/PHYLOViZutils
jacarrico/PlasmidCoverage
Initial tests in finding plasmid coverages from reads and inferring plasmid contents
jacarrico/qiime2-session
Material for Trainning session with QIIME2 for Microbial diversity analysis using 16S rRNA gene
jacarrico/sccion
SCCmec typing for MRSA
jacarrico/schlaf.github.io
web container for whac data and Whac-online
jacarrico/tweepy
A Python library for accessing the Twitter API
jacarrico/ummi-bioinformatics
Bioinformatics repository for the work developed at Molecular Microbiology and Infection Unit (http://im.fm.ul.pt) at Instituto de Medicina Molecular (http://imm.fm.ul.pt), Faculty of Medicine, University of Lisbon, Portugal