jacarrico

jacarrico's Stars

• d3/d3

  Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

  Language:Shell109k3.6k2.2k22.9k

• acaudwell/Gource

  software version control visualization

  Language:C++11.5k235241723

• stephenturner/oneliners

  Useful bash one-liners for bioinformatics.

  1.9k15510520

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python95235144175

• shenwei356/rush

  A cross-platform command-line tool for executing jobs in parallel

  Language:Go879204765

• assemblerflow/flowcraft

  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

  Language:Python2411810444

• tseemann/mlst

  :id: Scan contig files against PubMLST typing schemes

  Language:Shell1992313347

• B-UMMI/chewBBACA

  BSR-Based Allele Calling Algorithm

  Language:HTML1331713927

• ehec-outbreak-crowdsourced/BGI-data-analysis

  assemblies, annotations, further analysis on sequenced strains from the EHEC outbreak

  Language:Python12420217

• blab/nextflu

  Real-time tracking of influenza evolution

  Language:JavaScript88307419

• lairdm/islandplot

  SVG based genome viewer written in javascript using D3

  Language:JavaScript335127

• apetkau/microbial-informatics-2014

  Microbial Whole Genome Sequence data analysis labs for 2014

  Language:Shell295313

• Public-Health-Bioinformatics/pubmlst_client

  List and download schemes from pubMLST.org and other BIGSDB servers

  Language:Python8215

• mbcarbonetto/qiime2-session

  Material for Trainning session with QIIME2 for Microbial diversity analysis using 16S rRNA gene

  6206

• campy-db/Campy-Database

  A triplestore database and web application for the bacterium Campylobacter jejuni

  Language:Python2502

• dsobral/reseq

  Resequencing pipeline

  Language:Python2102

• josephhughes/PrepPhyloViz

  preparing files for phyloviz software

  2200

• jacarrico/MoranSim

  Language:Java1100

• phyloviz/phyloviz.github.io

  GitHub Pages website for Phyloviz organization

  Language:HTML1541