tseemann/mlst

Issues

• XS.c: loadable library and perl binaries are mismatched (got handshake key 0xfa80080, needed 0xf880080)

  #116 opened 3 years ago by peflanag
  3

• Wrong Listeria gene dapE_718 - actually it is dapE_7

  #140 opened 21 days ago by wolverineJT
  0

• Serratia MLST Schemes

  #136 opened 8 months ago by erinyoung
  3

• No matching manifest for linux/arm64/v8 in the manifest list entries

  #139 opened 3 months ago by DrDinhLuong
  0

• 'Latest' Docker container

  #138 opened 4 months ago by try8-cdc
  0

• alternative name of this tool for bio.tools repo

  #137 opened 8 months ago by mthang
  0

• ST not given for cgMLST

  #135 opened a year ago by mishmoods
  1

• If the mlst can output clonal complexes ?

  #130 opened 2 years ago by ybdong919
  1

• ST not given even though for all loci an exact allele match is found

  #134 opened a year ago by NimroddeWit
  1

• DB download fails with "ERROR: Download didn't fully complete!"

  #133 opened a year ago by marrip
  1

• Perl issue: uninitialized value

  #132 opened a year ago by ngraned
  0

• Reported schema not found in scheme_species_map.tab

  #128 opened 2 years ago by miguelpmachado
  2

• Perl issue in linux

  #131 opened a year ago by gizzlev
  0

• Get sequence of each from mlst commend line

  #129 opened 2 years ago by YaoXinZhi
  0

• IUPAC codes

  #127 opened 2 years ago by MJMCarvalho
  0

• Incorrect output for schemes with number of alleles < 7 when no hits are found by blastn

  #125 opened 2 years ago by stroehleina
  1

• More info for typing results?

  #124 opened 2 years ago by domenico-simone
  0

• How can i get the number of miss matches?

  #117 opened 3 years ago by mellowo
  1

• Update Species scheme map

  #123 opened 2 years ago by joergFLI
  0

• expanding --novel output to include matching alleles?

  #90 opened 5 years ago by jdalsdurf
  2

• Extract MLST sequences for trees

  #93 opened 5 years ago by TseWue
  5

• ST not identified

  #122 opened 2 years ago by ireneortega
  0

• SNP calling

  #99 opened 2 years ago by peflanag
  3

• Error while DB update

  #104 opened 2 years ago by ajkarloss
  2

• blastn usage reporting

  #110 opened 2 years ago by mcroxen
  2

• Is this in silico MLST?

  #113 opened 2 years ago by EsamAlmuhaideb
  1

• Fungal genomes not working

  #121 opened 3 years ago by 14corman
  1

• create v2.21.0 release?

  #120 opened 3 years ago by kapsakcj
  1

• yersinia McNally scheme missing in updated pubmlst database

  #118 opened 3 years ago by bala-ruokavirasto
  0

• Odd delays when running MLST on a slurm compute node.

  #115 opened 3 years ago by HBrendy
  1

• How to deal with changes of MLST scheme names in PubMLST?

  #114 opened 3 years ago by bioprojects
  0

• Failed to install latest version (v2.19.0) through conda

  #112 opened 3 years ago by llk578496
  3

• Problem updating mlst databases

  #107 opened 3 years ago by eduardopdev
  1

• What is sequence type?

  #111 opened 3 years ago by grendon
  0

• command error

  #109 opened 3 years ago by YuWang07
  0

• novel alleles already exist in pubMLST db

  #108 opened 3 years ago by kiepczi
  0

• cgMLST database creation documentation

  #106 opened 3 years ago by lskatz
  2

• Each scheme needs a genotype

  #105 opened 3 years ago by lskatz
  0

• No read out for 1 gene of the MLST scheme

  #103 opened 3 years ago by mdiricks
  0

• Title fight: mlst vs cge

  #102 opened 4 years ago by jdalsdurf
  2

• Does mlst have an issue with allele sequence headers contain periods? Confirmed.

  #100 opened 4 years ago by slvrshot
  1

• Invalid --schemes

  #101 opened 4 years ago by nwalas
  1

• dbases.xml updated suffix

  #98 opened 4 years ago by indexofire
  7

• Does not detect allele if it´s present in reverse orientation? False

  #97 opened 4 years ago by mdiricks
  4

• Multiple but same allele assigned

  #96 opened 4 years ago by ramay
  2

• MLST vs kraken identification conflict

  #94 opened 5 years ago by rajaldebnath
  6

• Add option to report all matched schemes

  #95 opened 5 years ago by hmontenegro
  2

• MLST output visualization

  #92 opened 5 years ago by mabouelk
  1

• XS error

  #89 opened 5 years ago by mredrejo
  1

• tseemann / mlst

  #91 opened 5 years ago by raomohan89
  1