Pinned Repositories
adventure
Code for a textbased Adventuregame
ansible_test_project
Setting up ansible test env
autopore
Suite of CWL workflows for nanopore de novo assembly.
bed_taste
Simple CLI to retrieve bed files for A2G protocol
bioconda-recipes
Conda recipes for the bioconda channel.
biotonne
Dockerfiles and additional files to dockerize specific bioinformatic tools.
BSC_Amplicon
Bash and R scripts used to analyze amplicon data
bwamem_benchmark_kreuzotter
Benchmarking bwamem on slurm cluster
cnv_snakes
verktoykasse
Containerized bioinformatic tools
marrip's Repositories
marrip/verktoykasse
Containerized bioinformatic tools
marrip/adventure
Code for a textbased Adventuregame
marrip/ansible_test_project
Setting up ansible test env
marrip/autopore
Suite of CWL workflows for nanopore de novo assembly.
marrip/bed_taste
Simple CLI to retrieve bed files for A2G protocol
marrip/bioconda-recipes
Conda recipes for the bioconda channel.
marrip/biotonne
Dockerfiles and additional files to dockerize specific bioinformatic tools.
marrip/BSC_Amplicon
Bash and R scripts used to analyze amplicon data
marrip/bwamem_benchmark_kreuzotter
Benchmarking bwamem on slurm cluster
marrip/cnv_snakes
marrip/containers
Bioinformatics containers
marrip/gene_list_svc
Database service server to get complete gene/region lists for different diagnostics
marrip/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
marrip/multi-package-containers
Testing building mulled containers for multi-requirement tools.
marrip/nerdschool1
Exercises 1/10/2019
marrip/PRONTO
rePort geneRator fOr iNpred Tumor bOards
marrip/slurm
Slurm: A Highly Scalable Workload Manager
marrip/test-datasets
Test data to be used for automated testing with the nf-core pipelines
marrip/test_xevi
marrip/wgs_a2g_konigskobra
WGS workflow to generate results for the ALL2Gether protocol
marrip/wgs_mgi_natter
Snakemake workflow to process sequencing data from MGI Instrument
marrip/wgs_somatic_cnv_sv_viper
Workflow to call structural and copy number variants in somatic whole genome data
marrip/wgs_somatic_pon
Create panel of normals for different tools
marrip/wgs_somatic_snp_viper
marrip/wgs_std_viper
Simple workflow to map WGS data to reference genome according to GATK best practices
marrip/wgs_trio_natter
Snakemake workflow to process WGS trio data from MGI instrument
marrip/wgs_vcf_anno_db
MongoDB database backend to hold annotated vcf data for data inspection.
marrip/wts_fusion_natter
Analysis workflow for RNASeq-data