marrip

marrip's Stars

• fa2k/raredisease-configs

  Config and setup to run nf-core/raredisease pipeline

  Language:Nextflow71

• ajeetdsouza/zoxide

  A smarter cd command. Supports all major shells.

  Language:Rust20.6k523

• c-BIG/NPM-sample-qc

  reference implementation of GA4GH WGS Quality Control Standards

  Language:mupad82

• spegel-org/spegel

  Stateless cluster local OCI registry mirror.

  Language:Go97247

• biogo/biogo

  biogo is a bioinformatics library for Go

  Language:Go37849

• go-playground/validator

  :100:Go Struct and Field validation, including Cross Field, Cross Struct, Map, Slice and Array diving

  Language:Go16.2k1.3k

• TileDB-Inc/TileDB

  The Universal Storage Engine

  Language:C++1.8k181

• biocommons/biocommons.seqrepo

  non-redundant, compressed, journalled, file-based storage for biological sequences

  Language:Python3935

• dolthub/dolt

  Dolt – Git for Data

  Language:Go17.4k491

• nf-core/raredisease

  Call and score variants from WGS/WES of rare disease patients.

  Language:Nextflow7535

• joerdav/xc

  Markdown defined task runner.

  Language:Go1k26

• jmforsythe/Git-Heat-Map

  Visualise a git repository by diff activity

  Language:JavaScript98138

• techiescamp/kubernetes-learning-path

  A roadmap to learn Kubernetes from scratch (Beginner to Advanced level)

  6.7k842

• 0xTCG/aldy

  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

  Language:C5220

• Clinical-Genomics/stranger

  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

  Language:Python286

• mskcc/facets

  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

  Language:R13465

• hydra-genetics/annotation

  Collections of rules to annotate vcf files.

  Language:Python2

• genomic-medicine-sweden/Twist_Solid

  Pipeline for Solid tumours

  Language:Python36

• iCAN-PCM/dragenflow

  command flow management for dragen

  Language:Python21

• hartwork/git-delete-merged-branches

  :fire: Command-line tool to delete merged Git branches

  Language:Python87014

• terrastruct/d2

  D2 is a modern diagram scripting language that turns text to diagrams.

  Language:Go16.2k400

• Infisical/infisical

  ♾ Infisical is the open-source secret management platform: Sync secrets across your team/infrastructure, prevent secret leaks, and manage internal PKI

  Language:TypeScript13.2k699

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.2k2.2k

• comet-ml/kangas

  🦘 Explore multimedia datasets at scale

  Language:Jupyter Notebook1k46

• chubin/cheat.sh

  the only cheat sheet you need

  Language:Python37.9k1.8k

• FlagAI-Open/FlagAI

  FlagAI (Fast LArge-scale General AI models) is a fast, easy-to-use and extensible toolkit for large-scale model.

  Language:Python3.8k415

• jetify-com/launchpad

  From Code to Kubernetes in One Step.

  Language:Go4178

• score-spec/spec

  The Score Specification provides a developer-centric and platform-agnostic Workload specification to improve developer productivity and experience. It eliminates configuration inconsistencies between environments.

  7.7k2.2k

• rancavil/slurm-cluster

  Docker local slurm cluster

  Language:Dockerfile5155

• AlterEgo7/slurm-kubernetes

  Language:Scala132