Pinned Repositories
ACI
Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.
CirculoCov
Estimates the coverage of nanopore or illumina reads on a draft assembly
needles
Nextflow workflow to run poppunk on a set of fasta files
roundabout
Finding regions of similarity between plasmids
soundtracks
A list of video game soundtracks that are great for work
tulatyper
Subtyping of Francisella tularensis subtypes
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Cecret
Reference-based consensus creation
Donut_Falls
Basic workflow for nanopore sequencing data
Grandeur
UPHL's Reference Free Pipeline
erinyoung's Repositories
erinyoung/roundabout
Finding regions of similarity between plasmids
erinyoung/CirculoCov
Estimates the coverage of nanopore or illumina reads on a draft assembly
erinyoung/tulatyper
Subtyping of Francisella tularensis subtypes
erinyoung/ACI
Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.
erinyoung/soundtracks
A list of video game soundtracks that are great for work
erinyoung/LaundryFlow
Laundry with nextflow
erinyoung/GA_testing
Just playing around with GA
erinyoung/nfpracticum
erinyoung/nfpracticum-demo
erinyoung/bioconda-recipes
Conda recipes for the bioconda channel.
erinyoung/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
erinyoung/erinyoung
erinyoung/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
erinyoung/needles
Nextflow workflow to run poppunk on a set of fasta files
erinyoung/Random
Random things I don't want to forget
erinyoung/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
erinyoung/nanoAMR
TBD : Getting AMR genes from nanopore reads
erinyoung/update_mash_dist
mash works best when given a mash dist file with a bunch of references.