Issues
- 5
chewbbaca_AlleleCallEvaluator bug
#204 opened by mcanses - 2
Can I get STs with cgMLST? (cgST)
#208 opened by juanjo255 - 2
keep pyrodigal output in gff
#207 opened by juanjo255 - 3
Feature Request: Add Function to Generate MSA FASTA File Using `results_allele.tsv`
#206 opened by vascokarla - 2
AlleleCallEvaluator Issue - KeyError
#205 opened by arshdeep1k - 1
Problem installing chewBBACA on Windows
#203 opened by harayalen - 9
Ecountering an issue when running AlleleCall
#182 opened by kamivain - 2
AlleleCall error : updating hash tables
#202 opened by LudoPoire - 9
Invalid alleles and invalid genes
#189 opened by lskatz - 9
SchemaEvaluator: html output files for individual gene cannot be displayed in browser
#159 opened by artmisk13 - 2
IndexError
#191 opened by kayobianco - 3
- 2
- 6
Can I use or add a different translation table for the genetic code (working with parasites)?
#200 opened by azmigueldario - 5
- 1
- 3
- 4
Chewbbaca visualization output
#181 opened by davidmaimoun - 2
Blast Local IDs too long?
#196 opened by cizydorczyk - 4
AlleleCall issue - Determining BLASTp self-score for each representative...
#195 opened by daraneda96 - 4
- 2
3.3.0 AlleleCall reports missing files
#186 opened by karlkashofer - 2
Coding strand convention
#193 opened by a-damC - 4
Documentation issue
#184 opened by karlkashofer - 2
Newest Pyrodigal breaks chewBBACA
#185 opened by karlkashofer - 2
Create git tag for v3.2.0 release
#188 opened by alanorth - 3
File not found because of wrong path AlleleCall
#187 opened by mlarjim - 2
- 3
Did the arg `--fr` get dropped?
#180 opened by russellsmithies - 3
INF not reporting
#177 opened by jtrew89 - 3
- 2
How can I obtain the file "excluded_genomes.txt"? And how was the file "GBS_assembly_stats.tsv" generated? Thank you for your response.
#161 opened by yolo2fh - 11
Error: invalid start byte
#173 opened by eam12 - 3
Problem: Unable to get paralogous_counts.tsv and run Paralog detection using step-by-step tutorial
#150 opened by luobosi - 5
- 2
No possibilty to turn off gene prediction completly
#171 opened by TorHou - 4
- 3
Issue with fasta input files
#169 opened by hkaspersen - 1
- 2
Duplicate alllele id's inserted into the database
#168 opened by jrober84 - 1
Get the closest profile
#167 opened by mweberr - 8
AlleleCall error due to a specific gene
#154 opened by MostafaYA - 3
Error on line 435
#137 opened by abomba - 1
how should I handle the column headers when I upload my "results_alleles.tsv" to Phyloviz online
#162 opened by famiji - 4
- 1
Can we specify file names of input assemblies?
#155 opened by MostafaYA - 2
ExtractCgMLST expects --t argument instead of -p
#144 opened by jkibilds - 5
Allele calling threshold
#146 opened by mlarjim - 4
cgMLST for two species at the same time
#142 opened by ireneortega - 3
AlleleCall error
#143 opened by ireneortega