kblin/ncbi-genome-download

Issues

• file type requested not found in NCBI

  #232 opened 5 months ago by mvalvano
  1

• Using ncbi-genome-download package

  #231 opened 5 months ago by ChillarAnand
  4

• Download genomes from assembly file

  #229 opened 5 months ago by ChillarAnand
  1

• Recent issue downloading from GenBank but not RefSeq

  #228 opened 6 months ago by raufs
  1

• gimme_taxa.py / ngd mismatched format

  #215 opened a year ago by zreitz
  2

• No downloads matched error

  #219 opened 6 months ago by tasha99
  2

• Host Link Could be Incorrect

  #223 opened 10 months ago by Mohammed-Quraishi
  2

• /path error when running ncbi-genome-download in a shell script

  #216 opened a year ago by KinSimon96
  1

• Failing during checking assembly?

  #224 opened 7 months ago by Thomieh73
  1

• issue with ncbi-genome-download

  #226 opened 6 months ago by SrichandanPadhi
  1

• KeyError: 'assembly_accession'

  #225 opened 7 months ago by biotemon
  1

• .I use commond line" ncbi-genome-download --formats fasta viral" to load refseq virus,it is 1847 complete squeuces in total,is it right?

  #195 opened 3 years ago by qinjunjun
  3

• Option for metadata file only

  #202 opened 2 years ago by Ahmed-Shibl
  1

• Download problem

  #191 opened 3 years ago by XLOXL
  2

• ncbi-genome-download shows error "Unsupported group"

  #222 opened 10 months ago by Anju-h
  4

• can it download genomes of specific strains?

  #220 opened a year ago by Liao-PRIC
  1

• Download only representative assembly version using ncbi-genome-download

  #217 opened a year ago by KinSimon96
  0

• Number of genomes downloaded not corresponding to number of entries

  #205 opened 2 years ago by arfaiq
  1

• Collect author info from other ncbi-genome-download contributors.

  #214 opened a year ago by kblin
  0

• How can I reference ncbi-genome-download

  #207 opened a year ago by padpadpadpad
  11

• KeyError: 'assembly_accession'

  #209 opened a year ago by scorreard
  17

• Support for filtering assemblies by sequencing platform?

  #208 opened 2 years ago by JonathanAbrahams1337
  3

• .faa.gz files not being downloaded for bacteria

  #136 opened 4 years ago by BhushanDhamale
  8

• Can't download unclassified organisms

  #206 opened 2 years ago by MatthieuBoulinguiez
  0

• Document valid -R or --refseq-categories REFSEQ_CATEGORIES values

  #133 opened 2 years ago by peterjc
  7

• Download hangs with no output when given long .txt file

  #200 opened 2 years ago by Tylersuard
  0

• Check if accessions has CDS?

  #203 opened 2 years ago by ElinorSterner
  1

• Feature request: filter by length of sequence

  #199 opened 2 years ago by Tylersuard
  0

• Connection Error, RemoteDisconnected

  #144 opened 2 years ago by lisavader
  18

• Databases version

  #197 opened 2 years ago by SergeyBaikal
  0

• Missing genomes when downloading with genura

  #196 opened 2 years ago by WEIGUO93
  0

• Error while downloading genera

  #194 opened 3 years ago by sanyalab
  0

• Downloading of cDNA, GFF3, and EST sequences

  #193 opened 3 years ago by sanyalab
  0

• newB question - can I get the "reference" genome for a tax ID?

  #192 opened 3 years ago by RichardCorbett
  0

• Can the software specify the output file name

  #180 opened 3 years ago by Achuan-2
  0

• Enhancements based on official API

  #177 opened 3 years ago by 444thLiao
  1

• perfect match option?

  #179 opened 3 years ago by RichardCorbett
  3

• All virus download errors

  #178 opened 3 years ago by xiaozhangzhang123
  1

• Add ngd to biocontainers?

  #176 opened 3 years ago by Midnighter
  1

• doanload failed when groups is set to all

  #175 opened 3 years ago by showteeth
  5

• ERROR: No downloads matched your filter. Please check your options.

  #174 opened 3 years ago by jolespin
  1

• Not downloading suppressed or replaced Refseq assembly accessions

  #138 opened 4 years ago by BobFukkink
  5

• Pseudogenes download

  #143 opened 4 years ago by gkoulouras
  2

• Filenames with genus, species and strain?

  #142 opened 4 years ago by johanneswerner
  0

• Reference sequence

  #141 opened 4 years ago by kate-simonova
  0

• problems downloading genome

  #140 opened 4 years ago by Timmywang1
  1

• Some RefSeq genomes not being downloaded

  #139 opened 4 years ago by sskashaf
  0

• Error using annotate

  #137 opened 4 years ago by IsabelFE
  3

• gimme_taxa.py: sqlite3.IntegrityError

  #135 opened 4 years ago by nick-youngblut
  1

• Feature request: Download a number of accession IDs ...

  #134 opened 4 years ago by phiweger
  3