Pinned Repositories
flowcraft
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
flowcraft-webapp
FlowCraft companion web application
bionode-watermill
💧Bionode-Watermill: A (Not Yet Streaming) Workflow Engine
gb_downloader
A script to download .gb files using ncbi eutils from GI present in fasta
pATLAS
Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:
pATLAS-db-creation
This repository is a test wrapper for the creation
pATLASflow
A pipeline to run mapping, mash screen and assembly methods for pATLAS.
PlasmidCoverage
Script to obtain plasmid id from WGS data using bowtie2 to map
tiagofilipe12's Repositories
tiagofilipe12/pATLAS
Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:
tiagofilipe12/pATLASflow
A pipeline to run mapping, mash screen and assembly methods for pATLAS.
tiagofilipe12/gb_downloader
A script to download .gb files using ncbi eutils from GI present in fasta
tiagofilipe12/PlasmidCoverage
Script to obtain plasmid id from WGS data using bowtie2 to map
tiagofilipe12/pATLAS-db-creation
This repository is a test wrapper for the creation
tiagofilipe12/awesome-nodejs-streams
Awesome resources and modules for Streams in Node
tiagofilipe12/bionode-watermill
💧Watermill: A Streaming Workflow Engine
tiagofilipe12/BITA
bita.py allows to blast mixed queries of proteins (tblastn) and nucleotides (blastn) against a custom nucleotide database or databases.
tiagofilipe12/blast_wrapper
tiagofilipe12/docker-imgs-tests
A repo to test docker image builds
tiagofilipe12/docker-watermill-tutorial
This is a dockerfile for bionode-watermill-tutorial
tiagofilipe12/docker_patlas
this is an experimental docker image for patlas
tiagofilipe12/Electron_tests
This is a sandbox for experimenting with electron
tiagofilipe12/fasta_breaker
A quick and dirty way to separate huge fasta file into many fastas with 1000 sequences.
tiagofilipe12/gbCDS2fasta
This script retrieves CDS data from .gb files to a fasta in which each CDS is a sequence entry
tiagofilipe12/GSoC17
GSoC Project: Streaming Workflow Engine
tiagofilipe12/mash_wrapper
This script runs MASH given a set of reads against specified references.
tiagofilipe12/MASHix
This script runs MASH, making a parwise comparisons between sequences in input (fasta) file(s).
tiagofilipe12/node_animation
This is a test repo for a node animation
tiagofilipe12/patlaspresentation
Presentation for patlas in reveal.js
tiagofilipe12/PhD_Scripts
This is a collection of begginer scripts used during my PhD thesis.
tiagofilipe12/plasmidpredictor
Predict plasmids from uncorrected long read data
tiagofilipe12/presentations
This is a repo for stashing presentations
tiagofilipe12/spammer-wdl
tiagofilipe12/trimer
tiagofilipe12/wdl-tests