Pinned Repositories
add_file_identifier
Allele_Calling
INNUENDO_docker
Docker-compose for INNUENDO Platform deployment
INNUENDO_PROCESS_CONTROLLER
INNUENDO Process controller source code wiht integration with Nextflow
INNUENDO_REST_API
Frontend application and REST API for the INNUENDO Platform
Online-PhyloViZ
patlas-compose
repository for patlas docker-compose recipe
phyloviz_graph
phylovizOnline-compose
test_pieCharts
bfrgoncalves's Repositories
bfrgoncalves/Online-PhyloViZ
bfrgoncalves/INNUENDO_REST_API
Frontend application and REST API for the INNUENDO Platform
bfrgoncalves/INNUENDO_docker
Docker-compose for INNUENDO Platform deployment
bfrgoncalves/phyloviz_graph
bfrgoncalves/phylovizOnline-compose
bfrgoncalves/INNUENDO_PROCESS_CONTROLLER
INNUENDO Process controller source code wiht integration with Nextflow
bfrgoncalves/patlas-compose
repository for patlas docker-compose recipe
bfrgoncalves/test_pieCharts
bfrgoncalves/ANI_Calculator
This program performs a given ANI method (ANIb or ANIm) on a set of input files or downloads a group of files by syncronizing to ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/ and by searching for the DOWNLOADTOKEN
bfrgoncalves/Bi_Calculator
Belonging Index Calculator
bfrgoncalves/boxPlot_from_matrix
bfrgoncalves/coreaccviz
bfrgoncalves/data-downloader
Nextflow pipeline to download files using axel
bfrgoncalves/EnteroMSTree
bfrgoncalves/filter_files_by_table_columns
bfrgoncalves/hackathon_Bath
bfrgoncalves/INNUENDO_files
files required for innuendo configuration
bfrgoncalves/INNUENDO_schemas
repository for the INNUENDO chewbbaca schemas
bfrgoncalves/INSaFLU_compose
Docker-compose version of the INSaFLU platform
bfrgoncalves/missingData
bfrgoncalves/msa
Modular BioJS compoment for a multiple sequence alignment
bfrgoncalves/mutational-signature-nf
bfrgoncalves/orderContigs_Nucmer
This program performs a NUCmer alignment of a set of query sequence files (.fasta) against a reference and returns a set of files with the contigs ordered, in a .tab format.
bfrgoncalves/pATLAS
Plasmid Atlas
bfrgoncalves/profile_statistics
Program that compares allelic profiles and returns similar and different loci
bfrgoncalves/profile_tab_to_fasta
This program converts a profile tab delimited file to a fasta file with the sequences of the profiles
bfrgoncalves/ReMatCh
Reads mapping against target sequences, checking mapping and consensus sequences production
bfrgoncalves/rnatoy
A proof of concept RNA-Seq pipeline with Nextflow
bfrgoncalves/schedule_app
bfrgoncalves/wgMLST_Representation
This program allows the visualization of results obtained from an wgMLST allele calling method.