bidsapp
There are 30 repositories under bidsapp topic.
connectomicslab/connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
bids-apps/MRtrix3_connectome
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
bids-apps/freesurfer
BIDS app wrapping recon-all from FreeSurfer
bids-apps/HCPPipelines
A BIDS App for minimal preprocessing using the HCP Pipelines
bids-apps/rsHRF
Resting state HRF estimation from BOLD-fMRI signal
nidea1/e-Auction
A Django(backend) & React(frontend) based full-stack real time auction application
bids-apps/CPAC
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
bids-apps/hyperalignment
Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.
bids-apps/SPM
BIDS App containing an instance of the SPM software.
bids-apps/BrainSuite
BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.
bids-apps/baracus
Predicts brain age, based on data from Freesurfer 5.3
bids-apps/PyMVPA
runs MVPA and RSA analysis BIDS bold derivative data
cpp-lln-lab/bidspm
an SPM centric BIDS app
DCAN-Labs/infant-abcd-bids-pipeline
Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
bids-apps/BROCCOLI
BIDS App for BROCCOLI
bids-apps/rs_signal_extract
BIDS App for resting state signal extraction using nilearn.
PennLINC/qsirecon
Reconstruction of preprocessed q-space images (dMRI)
bids-apps/mindboggle
Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data
bids-apps/ndmg
BIDS app for NeuroData's MRI to Graphs pipeline
bids-apps/niak
Pipeline for preprocessing of fMRI and structural MRI scans
bids-apps/nipypelines
Preprocess functional tasks in a BIDS dataset.
bids-apps/oppni
runs fast optimization of preprocessing pipelines for BOLD fMRI
bids-apps/QAP
PCP Quality Assessment Protocol
brainhack-ch/superres-mri
Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution
cpp-lln-lab/bidsMReye
BIDS app using deepMReye to decode eye motion for fMRI time series data.
bids-apps/tracula
implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.
bids-apps/brainiak-srm
This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK
bids-apps/aa
BIDS App containing an instance of the Automatic Analysis
bids-apps/antsCorticalThickness
BIDS App for calculating cortical thickness using ANTs
bids-apps/SnPM
BIDS App containing an instance of the SnPM software.