binning

guillermo-navas-palencia/optbinning

Optimal binning: monotonic binning with constraints. Support batch & stream optimal binning. Scorecard modelling and counterfactual explanations.

nf-core/mag

Assembly and binning of metagenomes

ShichenXie/scorecard

Scorecard Development in R, 评分卡

oguzeroglu/Nearby

Find nearby 3D objects in constant time O(1).

rhysnewell/aviary

A hybrid assembly and MAG recovery pipeline (and more!)

metagentools/GraphBin

✨🧬 Refined binning of metagenomic contigs using assembly graphs

metagentools/MetaCoAG

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

seqan/raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

abeusher/timehash

An algorithm for creating user configurable, variable-precision sliding windows of time. Useful for binning time values in large collections of data.

francescoalemanno/BayesHistogram.jl

pure Julia package for optimal histogram binning, based on piecewise constant model.

KwanLab/Autometa

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

natashabatalha/PandExo

A Community Tool for Transiting Exoplanet Science with the JWST & HST

metagentools/GraphBin2

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

qiyunlab/binarena

BinaRena: Interactive Visualization and Binning of Metagenomic Contigs

songweizhi/Binning_refiner

Improving genome bins through the combination of different binning programs

CAMI-challenge/AMBER

AMBER: Assessment of Metagenome BinnERs

carstenbauer/BinningAnalysis.jl

Statistical standard error estimation tools for correlated data

dionhaefner/bayesian-histograms

Bayesian histograms for estimation of binary rare event rates, with fully automated bin pruning :bar_chart:

Arkadiy-Garber/SprayNPray

Rapid and simple taxonomic profiling of genome and metagenome contigs

claczny/VizBin

Repository of our application for human-augmented binning

pirovc/metameta

anuradhawick/MetaBCC-LR

Reference-free Binning of Metagenomics Long Reads using Coverage and Composition

arpitnarechania/binguru

BinGuru is an open-source Typescript package to bin/classify data using 18 established binning methods, including a new method, resiliency.

marbl/binnacle

Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

rsquaredacademy/rbin

Tools for binning data

Amshra267/Cassandra-Udyam

Contains our Approach for the competition organized at Udyam'21

DivyaKrishnani/Data-Preprocessing-with-Python

Implementation of Data Preprocessing techniques such as handling missing values, noise smoothing, PCA, etc.

xxzcool/scoremodel

Credit scoring modeling toolbox based on R

LeonDlugosch/MetaSeq-Toolkit

This pipeline is intended to be a convenient way to work though large sets of metagenomic or metatranscriptiomic datasets while also retaining high analytical flexibility due to retained intermediate results that might be useful outside of the intended purpose.

erikhuizinga/honeycomb

Tools for hexagonal binning (honeycomb plot) and visualisation.

ast0815/remu

ReMU - Response Matrix Utilities

ekenes/binning-experiments

Various apps exploring client-side binning in the ArcGIS JS API.

Keris/creditscoring

Credit scoring toolkit with python

nunofonseca/msi

QuentinLetourneur/Let-it-bin

Optimize workflow for binning metagenomic short reads from multiple samples