CAMI-challenge/AMBER

Issues

• Why "recall_avg_seq" not average over the total number of genomes?

  #61 opened 8 days ago by jiaojiaoguan
  2

• what are the differences among "recall_avg_bp", "recall_avg_bp_cami1", "recall_avg_bp_sem", "recall_avg_bp_sem_cami1"

  #60 opened 2 months ago by jiaojiaoguan
  6

• Question of the output

  #40 opened 4 years ago by psj1997
  3

• Old files archive are not correct

  #58 opened 4 months ago by SantaMcCloud
  2

• Bug which make the option genome_coverage not usable

  #57 opened 5 months ago by SantaMcCloud
  1

• mixed dtype for BINID can cause bins with same IDs to be split into separate bins

  #54 opened 5 months ago by mattheatley
  2

• Evaluating Gold standard encountered RuntimeWarning: overflow

  #50 opened 2 years ago by yazhinia
  8

• Updates for AMBER requirements

  #52 opened 2 years ago by yazhinia
  1

• How does mapping work?

  #51 opened 2 years ago by yazhinia
  4

• ImportError: cannot import name 'Markup' from 'jinja2'

  #49 opened 2 years ago by eparisis
  2

• gold standard mapping column BINID vs binning assignment file

  #47 opened 3 years ago by Paupiera
  3

• Other problem.

  #46 opened 4 years ago by zhang570221322
  2

• a data-related problem

  #45 opened 4 years ago by Huangpq2019
  1

• Issue when running add_length_column.py

  #44 opened 4 years ago by polinanvkv
  2

• amber only considers bins with completeness > 0 ?

  #43 opened 4 years ago by dpellow
  1

• Error creating html - character encoding

  #42 opened 4 years ago by dpellow
  4

• Error in creating html page

  #41 opened 4 years ago by rmenegaux
  2

• "nan" values in Purity (bp) and Purity (seq)

  #39 opened 4 years ago by apcamargo
  2

• Output metrics bp vs seq.

  #38 opened 5 years ago by ohickl
  2

• Error creating genome binning plots

  #37 opened 5 years ago by ohickl
  0

• a question about AMBER 2.0.21-beta

  #36 opened 5 years ago by ziyewang
  2

• v2.0.17-beta TWO bugs

  #35 opened 6 years ago by Ash1One
  4

• Filter contigs by length

  #34 opened 6 years ago by abremges
  3

• VERSION

  #13 opened 7 years ago by pbelmann
  1

• Improve error message(s)

  #30 opened 7 years ago by abremges
  2

• amber package name is already taken on PyPI. Please choose a different name

  #25 opened 7 years ago by graingert
  2

• Create GitHub Page

  #14 opened 7 years ago by pbelmann
  3

• Allow users to install AMBER with pip

  #5 opened 7 years ago by pbelmann
  1

• colorized html table

  #11 opened 7 years ago by pbelmann
  0

• HTML Table

  #9 opened 7 years ago by pbelmann
  0

• AMBER in Dockerhub

  #12 opened 7 years ago by pbelmann
  0

• CHANGELOG

  #15 opened 7 years ago by pbelmann
  0

• Increase performance of the produced HTML

  #6 opened 7 years ago by pbelmann
  0

• Tabs in html file should be in horizontal order

  #2 opened 7 years ago by pbelmann
  0

• Remove warning when building html plots

  #1 opened 7 years ago by pbelmann
  0