CAMI-challenge

Pinned Repositories

AMBER
AMBER: Assessment of Metagenome BinnERs
Language:Python27 8 337
cami-concoct
Biobox of the binning tool CONCOCT for the cami challenge
Language:Python1 15 00
CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
Language:Python176 23 18837
CAMITAX
CAMITAX: Taxon labels for microbial genomes
Language:Nextflow29 7 254
contest_information
File format specifications, Presentation materials and other information
3 15 121
data
Pointers to publicly available assembly, binning, and profiling results
Language:HTML4 3 64
docker_profiling_tools
Stefans Collection of Dockerfiles and helper scripts for profiling tools
Language:Perl2 3 84
firstchallenge_evaluation
Directory containing example result visualizations and scripts for generating figures and tables
Language:R2 19 333
OPAL
OPAL: Open-community Profiling Assessment tooL
Language:Python27 16 526
second_challenge_evaluation
Repository for codes, analyses and visualizations for the CAMI II challenges
Language:HTML11 14 136

CAMI-challenge's Repositories

CAMI-challenge/CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
Language:Python176 23 18837
CAMI-challenge/CAMITAX
CAMITAX: Taxon labels for microbial genomes
Language:Nextflow29 7 254
CAMI-challenge/AMBER
AMBER: Assessment of Metagenome BinnERs
Language:Python27 8 337
CAMI-challenge/OPAL
OPAL: Open-community Profiling Assessment tooL
Language:Python27 16 526
CAMI-challenge/second_challenge_evaluation
Repository for codes, analyses and visualizations for the CAMI II challenges
Language:HTML11 14 136
CAMI-challenge/data
Pointers to publicly available assembly, binning, and profiling results
Language:HTML4 3 64
CAMI-challenge/contest_information
File format specifications, Presentation materials and other information
3 15 121
CAMI-challenge/docker_profiling_tools
Stefans Collection of Dockerfiles and helper scripts for profiling tools
Language:Perl2 3 84
CAMI-challenge/firstchallenge_evaluation
Directory containing example result visualizations and scripts for generating figures and tables
Language:R2 19 333
CAMI-challenge/bbx-binning-evaluation-jd
A biobox for CAMI binning evaluation
Language:Python1 15 81
CAMI-challenge/bbx-profiling-evaluation-dk
Language:Python1 13 41
CAMI-challenge/BenchmarkingToolkitTutorial
1 6 01
CAMI-challenge/cami-concoct
Biobox of the binning tool CONCOCT for the cami challenge
Language:Python1 15 00
CAMI-challenge/CAMISIM-DATA
Supplementary data for CAMISIM
1 5 0
CAMI-challenge/MetagenomeSimulationPipeline
The metagenome simulation pipeline was permanently moved to its new destination: https://github.com/CAMI-challenge/CAMISIM
1 7 00
CAMI-challenge/bbx-binning-evaluation-ig
Language:Python0 4 20
CAMI-challenge/evaluation
Evaluation tools
Language:Python0 7 40
CAMI-challenge/bbx-profiling-evaluation-krona
Language:Perl2 0
CAMI-challenge/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
CAMI-challenge/CamiClient
Language:Java3 61
CAMI-challenge/CamiIO
Language:Java4 0
CAMI-challenge/docker-camibase-binning-evaluation
Language:Shell6 0
CAMI-challenge/docker-camibase-profiling
A container image to use for metagenomic community profiling programs
Language:Shell17 2
CAMI-challenge/file_formats
5 0
CAMI-challenge/frc_hacking
18 0
CAMI-challenge/genome_binning_evaluation
Language:Python8 4
CAMI-challenge/ObjectStorageWrapper
Language:Java4 0
CAMI-challenge/quast
Language:Shell14 0
CAMI-challenge/quast_frc
Genome assembly evaluation tool
Language:C18 01
CAMI-challenge/university-email-domains
Domains used for university-issued email addresses
4 0