biogeography
There are 71 repositories under biogeography topic.
EcoJulia/SpatialEcology.jl
Julia framework for spatial ecology - data types and utilities
earth-chris/elapid
Species distribution modeling tools, including a python implementation of Maxent
adamlilith/enmSdm
Faster, better, smarter ecological niche modeling and species distribution modeling
adamlilith/enmSdmX
Tools for Modeling Niches and Distributions of Species
PoisotLab/GBIF.jl
Functions and types to access GBIF data from Julia
chenyangkang/stemflow
A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)
manaakiwhenua/virtualNicheR
virtualNicheR: creating virtual fundamental and realised niches
PoisotLab/SpeciesDistributionToolkit.jl
Work with species distributions in Julia
PEM-Humboldt/biomodelos-sdm
BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.
GlobalEcologyLab/poems
Pattern-oriented ensemble modelling and simulation (with spatially explicit populations)
tahiri-lab/aPhyloGeo
aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
claraqin/neonMicrobe
Processing NEON soil microbe marker gene sequence data into ASV tables.
mingkaijiang/biome_specific_predictability
Calculating temperature and precipitation predictability at the global scale
V-Z/course-r-mol-data
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
nmatzke/PhyBEARS.jl
Phylogenetic biogeography SSE models for large state spaces
Pakillo/FloraIberica
An R package to get taxonomic and distribution data for the ~6500 vascular plants present in the Iberian Peninsula and Balearic Islands
PEM-Humboldt/biomodelos-website
BioModelos web application v 2
bioRgeo/bioregion
:package: An R package to compare several methods of bioregionalizations
agimenezromero/PierceDisease-GlobalRisk-Predictions
A model to assess the global risk of Pierce's Disease of grapevines
FMestre1/MetaLandSim
Metapopulations Persistence and Range Expansion Simulation
m-orton/Arctic-Biogeographical-Analysis-Pipeline
Arctic Community Similarity using DNA Barcoding Data
nnbuainain/get_confidence_interval_from_treePL
get confidence interval from phylogenetic trees with treePL
stanford-ccb/ccb-id
The Center for Conservation Biology's imaging-spectroscopy-based species classification approach.
camayal/treetom
Develop repo for TreeToM
ccsosa/Garcia-Merchan-et-al-Chapter-2020
This repository is a supplementary information repository from García-Merchán et al... 2020 publication.
DataDrivenEcologicalSynthesis/VirtualBiogeography
Analyzing the biogeographical accuracy of 🐠Finding Nemo🐡
JennaMcCullough/Corvides-SSE
RevBayes code used in McCullough et al. 2022 Systematic Biology
phytomosaic/vuln
Niche-based vulnerability of species and communities.
rBatt/spatialDiversity
Spatial patterns in biodiversity change
tdwg/geoschemes
A set of geographic areas (named entities and boundaries) that provides a mapping between natural biogeographic and common administrative entities.
walidbosso/C_TSPBBO
Implementation of the Biogeography-Based Optimization (BBO) algorithm to solve the Traveling Salesman Problem (TSP)
albertojcoello/PAICE
Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. (2022) <doi:10.1111/jbi.14341>.
bhartidk/centipede_macrogenetics
This repository contains R scripts to reproduce results and figures from our macrogenetics study where we investigate the species traits and biogeographic variables correlated with intra-specific genetic diversity in centipede species.
nicole-a-moore/living-up-to-thermal-potentials
Data, code & figures used to assess global patterns of potential thermal niche filling
tahiri-lab/py_madaclim
A simple Python API to interact with the Madaclim database