bioinformatics-scripts
There are 174 repositories under bioinformatics-scripts topic.
fg6/YeastStrainsStudy
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
gkoulouras/seq-sec-ratio
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
zhangsjsky/CSTK
C & S's Toolkit
ainefairbrother/GenBank-parser
This is a parser written to extract data from a GenBank file and insert it into an SQL database. This is part of a project that I did for my MSc in Bioinformatics.
arendsee/bioinfo-utils
A gallimaufry of questionable shellscripts
bhaveshashok/AutoDockVina-BatchSubmission
A simple batch submission script to submit jobs to AutoDock Vina on Linux and MacOS developed by Bhavesh Ashok.
chinmayaNK22/MGF-file-splitter
Extract raw file specific spectra from an unassigned spectra file (.mgf) from Proteome Discoverer and generate new .mgf files specific to raw files
FabianJetzinger/sort_gtf
Shell script to sort .gtf files
fomightez/pdbepisa-binder
Using data from PDBePISA with the convenience of Python and Jupyter.
fomightez/pdbsum-binder
Demonstrating analysis of PDBsum-related data via active Jupyter sessions provided via MyBinder.org
JFresnedo/AmpSeq
A framework for semi-automated analysis of Amplicon Sequencing data
kc-moharana/bioinformatics_codes
My PERL and other UNIX based codes developed while analysing NGS, microarray other data.
mrdanieleze/Genomic-Sequence-Comparison-Code-GSCC-
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
mughal41/Automate_HETATM_removal
Script to Automate removal of HETATOMS
orangeSi/pykits
simple python script for bioinformatics
parisepigenetics/rna_feat_ext
Software tools to extract mRNA's features from a list of ENSEMBL gene IDs.
roseedwin/Benchmarking-taxonomic-classifiers-for-soil-shotgun-data
Benchmarking various taxonomic classifiers for profiling soil metagenomic data, with scripts and tools tailored for fungal, bacterial, and archaeal genome identification.
Seb943/Smith_Waterman_Py
Implementing the Smith-Waterman algorithm in Python
ShawnWx2019/Gh_circRNAseq
Analysis and visualization R scripts of my research 「Genome-wide profiling of circular RNAs during the hybridization of two elite inbred lines of Gossypium hirsutum
svsuresh/rscripts
Repository miscellaneous R scripts including scripts for RNAseq analysis
tgolubch/castanet
Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
wintergenomics/wbs-rbioinfo
R es un lenguaje básico de referencia en el mundo de la estadística y una herramienta fundamental para el análisis de datos en el área de las ciencias de la vida. R permite automatizar los cálculos estadísticos y la generación de diversos gráficos para facilitar el análisis de datos.
zd200572/bioinfor-python
bioinformatics
ZealousGeneticist/cartoflow
A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.
asadprodhan/BioinfTutorials
Bioinf Tutorials
conorheffron/global-max-sim-matrix
Compute Global Maximum Similarity Matrix for 2 Sequences
Dogth/biomultitool
GUI for a few tools
jakobilab/bioinfo-scripts
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder
lauromoraes/snps-qtl-selection
Script for custom SNPs selection in QTL study using vcf files as input.
MagnusBertelsen/gmx_wheel_plus
gmx_wheel+ is a tool for analysing and visualizing the orientation of helical antimicobial peptides based on molecular dynamics simulations
niqolla/LigandMapper.py
A python standalone program that predicts ligand binding sites on proteins.
renatawong/bioinformatics-algorithms
Python implementation of bioinformatics algorithms and useful functions.
RubyvanderHolst/seq-to-fasta
A script to convert multiple SEQ files to a singular FASTA file
thuylinhmk/Histone-Modification-Networks
histone modification hospot
V-Z/structure-multi-pbspro
Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
xlq902/FAFSA-combine
This is a program written in c# for neat organization of FASTA files into one file to make multiple sequencing alignments easier.