biomedical
There are 232 repositories under biomedical topic.
allenai/scispacy
A full spaCy pipeline and models for scientific/biomedical documents.
cambridgeltl/visual-med-alpaca
Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.
caufieldjh/awesome-bioie
š§« A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
kyegomez/Med-PaLM
Towards Generalist Biomedical AI
zjunlp/Mol-Instructions
[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
MousaviSajad/SleepEEGNet
SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach
biocypher/biocypher
A unifying framework for biomedical research knowledge graphs
vaticle/biograkn
BioGrakn Knowledge Graph
Correr-Zhou/RepMode
[CVPR 2023 (Highlight)] Offical implementation of the paper "RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction".
OmooLab/BioxelNodes
For scientific volumetric data visualization in Blender.
patverga/bran
Full abstract relation extraction from biological texts with bi-affine relation attention networks
Lee-Gihun/MEDIAR
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
SCIInstitute/SCIRun
SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.
dlab-berkeley/R-Deep-Learning
Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization
svjan5/medtype
MedType: Improving Medical Entity Linking with Semantic Type Prediction
dreji18/Bio-Epidemiology-NER
Recognize bio-medical entities from a text corpus
grimmlab/MicrobiomeBestPracticeReview
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
amzn/amazon-weak-ner-needle
Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data
typedb-osi/typedb-bio
TypeDB Bio: Biomedical Knowledge Graph
som-shahlab/trove
Weakly supervised medical named entity classification
GanjinZero/KeBioLM
Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
PlusLabNLP/GEANet-BioMed-Event-Extraction
Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs
BorgwardtLab/S3M
A software package for statistically significant shapelet mining
tuttelikz/farabio
:robot: PyTorch toolkit for biomedical imaging :heart:
GanjinZero/BioBART
BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model [ACL-BioNLP 2022]
GCY/wxECGAnalyzer
This project is for Electrocardiogram(ECG) signal algorithms design and validation, include preprocessing, QRS-Complex detection, embedded system validation, ECG segmentation, label your machine learning dataset, and clinical trial...etc.
GCY/Atrial-Fibrillation-Detection-Blood-Pressure-Monitor-Oscillometric-Method-
Atrial Fibrillation Detection Blood Pressure Monitor (Oscillometric Method)
UvaCsl/HemoCell
HemoCell is a high-performance suspension code for simulating blood flows developed by the Computational Science Lab at the University of Amsterdam.
IBT-FMI/SAMRI
Small Animal Magnetic Resonance Imaging via Python.
BMDSoftware/neji
Flexible and powerful platform for biomedical information extraction from text
ericspod/Eidolon
Biomedical Visualization and Analysis Framework
wangmengsd/pdd-graph
PDD Graph : Bridging MIMIC-III and Linked Data Cloud
kbogas/medknow
Medical Relations and Entities Extraction
hemelb-codes/hemelb
A high performance parallel lattice-Boltzmann code for large scale fluid flow in complex geometries
fedbiomed/fedbiomed
A collaborative learning framework for empowering biomedical research
bionlp-hzau/BioNLP-Corpus
Repository used to collect biomedical corpus on the Internet!