bionlp
There are 63 repositories under bionlp topic.
ncbi-nlp/BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
ncbi-nlp/BLUE_Benchmark
BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
abachaa/Existing-Medical-QA-Datasets
Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems
gsarti/covid-papers-browser
Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠 📖
cambridgeltl/sapbert
[NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
medmcqa/medmcqa
A large-scale (194k), Multiple-Choice Question Answering (MCQA) dataset designed to address realworld medical entrance exam questions.
jakelever/kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
DUTIR-BioNLP/Taiyi-LLM
Biomedical LLM, A Bilingual (Chinese and English) Fine-Tuned Large Language Model for Diverse Biomedical Tasks
Rostlab/nalaf
NLP framework in python for entity recognition and relationship extraction
ncbi-nlp/PhenoTagger
PhenoTagger
abachaa/MEDIQA2019
Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019
cambridgeltl/cometa
Corpus of Online Medical EnTities: the cometA corpus
hu-ner/huner
Named Entity Recognition for biomedical entities
ncbi/AIONER
AIONER
phosseini/CREST
A Causal Relation Schema for Text
jakelever/pubrunner
A framework for keeping biomedical text mining result up-to-date
jakelever/cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
datquocnguyen/BioPosDep
Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)
bionlp-hzau/BioNLP-Corpus
Repository used to collect biomedical corpus on the Internet!
bionlplab/bioc
Data structures and code to read/write BioC XML and Json.
jakelever/civicmine
Text mining cancer biomarkers for the CIVIC database
biomedicalinformaticsgroup/cadmus
A full-text article retrieval pipeline for biomedical literature.
Bohdan-Khomtchouk/biosemble
AI assembly of bioNLP wordnets
suamin/MIL-RBERT
MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
jakelever/biowordlists
Biomedical wordlists (of drugs, genes, etc) for several text mining projects
PKPDAI/PKDocClassifier
Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo
jakelever/VERSE
Vancouver Event and Relation System for Extraction
leebird/bionlp17
Noise Reduction Methods for Distantly Supervised Biomedical Relation Extraction
allenai/TOPICAL
:magic_wand::page_facing_up: TOPICAL: TOPIC pages AutomagicaLly
biomedicalinformaticsgroup/ParallelPyMetaMap
This code is to run MetaMap in parallel using Python.
Anthony9624/Various-documents
Various documents for deep Learning(Continually updated)
dmis-lab/bioner-generalization
How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?
ncbi/SpeciesAssignment
SpeciesAssignment
dmis-lab/bc7-chem-id
DMIS at BioCreative VII NLMChem Track
ylaboratory/flambe
datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files