chromatin-structure

There are 8 repositories under chromatin-structure topic.

  • ZhangGroup-MITChemistry/DRAGON

    Language:Python11401
  • Hi-C-LSTM

    kevinbdsouza/Hi-C-LSTM

    Hi-C-LSTM is a framework to form Hi-C representations that are useful for tasks such as element identification and in-silico modification.

    Language:Python6310

  • batxes/4Cin

    3D chromatin modeler using 4C-seq data

    Language:Python3390

  • jumphone/InferLoop

    InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop

    Language:R3200

  • koustav-pal/HiCBricks

    HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.

    Language:R33194

  • sa501428/clear-tools

    Chromatin Landscape Exploration, Analysis, and Research Tools

    Language:Java2301

  • yufanzhouonline/HiSIF

    HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops

    Language:C++1230

  • batxes/Irastorza-Azcarate_Kukalev_Kempfer_2024

    Code used to plot the figures in "Extensive folding variability between homologous chromosomes in mammalian cells"

    Language:Python0101