circrna-prediction

There are 8 repositories under circrna-prediction topic.

  • iprada/Circle-Map

    A method for circular DNA detection based on probabilistic mapping of ultrashort reads

    Language:Python6168319

  • nf-core/circrna

    circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

    Language:Nextflow481116326

  • PSSUN/CircCode

    A Python3-base pipeline for translated circular RNA(circRNA) identification

    Language:Python161144

  • lanbiolab/KGANCDA

    KGANCDA is effective to predict associations between circRNA and cancer, which is based on knowledge graph attention network. The detail of the paper will be released in this page after the paper accepted.

    Language:Python13226
  • CRAFT

    annadalmolin/CRAFT

    CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.

    Language:RMarkdown81123

  • johnlcd/CIRCScan

    Toolkit for circRNA prediction by machine learning

    Language:R6202

  • daaaaande/auto_find_circ

    automating find_circ

    Language:Perl1100

  • cgodatascience/circRNA

    Classification of RNA-Seq samples using circRNA expression

    Language:HTML0100