iprada/Circle-Map

Issues

• Bio.Alphabet has been removed from Biopython

  #99 opened 5 months ago by newpest
  0

• ignore unparsed_pd is empty

  #100 opened 5 months ago by newpest
  0

• RuntimeWarning in Circle-Map Realign

  #98 opened 8 months ago by hanssli
  3

• A problem of searching principle of Circle-Map

  #97 opened a year ago by FeiLiuEM
  3

• Circle-map Realign run too slow at the end.

  #96 opened a year ago by Chester729
  0

• input data

  #95 opened a year ago by CaroleBelliardo
  1

• complicated circles

  #94 opened a year ago by natashaweiser
  0

• some errors report about Circle-Map Repeats -i

  #93 opened a year ago by fanch1122
  0

• Circle Map Realign

  #92 opened 2 years ago by uretaj
  0

• Circle-Map Repeats output file

  #91 opened 2 years ago by simonestensgaard
  2

• Realign KeyError

  #65 opened 4 years ago by hartlama
  9

• How to plot the results in circular form?

  #90 opened 2 years ago by ShixiangWang
  0

• can I split alignment by chromosomes to speed up the last step

  #89 opened 2 years ago by zhuyiqin
  0

• Using bowtie2 with circle-map

  #88 opened 2 years ago by nguyenkduy0510
  0

• An error happenend during execution. Exiting

  #52 opened 4 years ago by johnstonmj
  9

• Circle_Map takes an unusually long time to read files.

  #86 opened 2 years ago
  1

• Could Circle-Map detect chimeric eccDNAs?

  #85 opened 2 years ago by Runyux
  1

• ImportError: Bio.Alphabet has been removed from Biopython.

  #87 opened 2 years ago by ZHONGHONGXIN
  0

• glibc conflicts when installing

  #83 opened 2 years ago by zhuyiqin
  0

• Why do the coordinates of the circle exceed the length of the contig？

  #81 opened 3 years ago by xdli009
  1

• Update Pypi Version to 1.1.5

  #84 opened 2 years ago by DSchreyer
  0

• Questions about Circle-Map bam2bam

  #80 opened 3 years ago by 178875
  0

• cannot convert float NaN to integer

  #79 opened 3 years ago by lssb
  0

• how to avoid to getting repeat region ?

  #78 opened 3 years ago by panxiaoguang
  1

• The output files of Circle Map Repeats

  #77 opened 3 years ago by shaka-emperor
  2

• ReadExtractor fails if the first read in bam file is an unpaired read2

  #55 opened 4 years ago by johnstonmj
  1

• questions about quantification

  #76 opened 3 years ago by taoshengqiansui
  2

• Problems with 'Split reads' and' Discordants reads'

  #74 opened 3 years ago by Leo152
  2

• Question regarding the "Circle score"

  #73 opened 3 years ago by ko0000
  3

• Criteria for filtering

  #67 opened 3 years ago by njaupan
  2

• cannot use absolute path in ReadExtractor

  #75 opened 3 years ago by jinyung
  1

• Questions about the Circle-map ReadExtractor

  #72 opened 3 years ago by Le1223
  6

• Warnings in Circle-Map Realign tutorial

  #50 opened 4 years ago by johnstonmj
  5

• When applying Circle-Map to classcial WGS data, I may get some FASLE POSITIVE results...

  #71 opened 3 years ago by shaka-emperor
  2

• Circle-Map tutorial not working with hg38, but does work with hg19

  #70 opened 3 years ago by eallen-bbi
  0

• Could not retrieve index file for examples

  #68 opened 3 years ago by ShixiangWang
  6

• How to assign independent mapping quality scores to split read alignments for bam files?

  #69 opened 3 years ago by ShixiangWang
  2

• Long runtime with Circle Realign?

  #66 opened 4 years ago by hartlama
  5

• Fail to open alignment file

  #64 opened 4 years ago by hartlama
  0

• ecDNA only from Chr10 and Chr11

  #63 opened 4 years ago by lanliting
  4

• Only got ec

  #61 opened 4 years ago by lanliting
  0

• ecDNA detected only in Chr10 and Chr11

  #62 opened 4 years ago by lanliting
  0

• combining samples before Circle-Map analysis

  #60 opened 4 years ago by hartlama
  5

• NotImplementedError: "sortBed"

  #58 opened 4 years ago by yjx1217
  3

• Some columns in the output have no values

  #59 opened 4 years ago by Somnvs
  2

• Some doubts about the output of Circle-map

  #57 opened 4 years ago by Somnvs
  1

• Preprocessing circle-seq data before using circle-map

  #56 opened 4 years ago by Jiangxiaoyu1i
  1

• about samtools index for bam

  #54 opened 4 years ago by 10KGenomics
  4

• Command help

  #53 opened 4 years ago by gq97
  2

• Divide by zero during coverage calculation?

  #51 opened 4 years ago by johnstonmj
  0