Pinned Repositories
VariantAnnotation
Annotation of Genetic Variants
BiCG_2018
Bioinformatics of Cancer Genomics 2018 workshop
chip_broad_pipeline
Call broad ChIP peaks from paired Illumina sequencing data
jitterbug
Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.
single-cell-rna-seq-template
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
all2vcf
Toolkit to convert the output of common variant calling programs to VCF
dorado
Oxford Nanopore's Basecaller
pbbioconda
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
johnstonmj's Repositories
johnstonmj/chip_broad_pipeline
Call broad ChIP peaks from paired Illumina sequencing data
johnstonmj/jitterbug
Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.
johnstonmj/single-cell-rna-seq-template
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.