PacificBiosciences/pbbioconda

Issues

• pbsv call somatic SV for tumor/normal samples

  #720 opened 11 days ago by DayTimeMouse
  1

• Multi-threading option doesn't work in pbsv call

  #724 opened 16 days ago by mas-agis
  1

• pigeon sort error: GFF/GTF file error for some but NOT all files

  #721 opened 22 days ago by AnnikaMueller05
  1

• FATAL ccs ERROR could not open for reading

  #723 opened 22 days ago by Arraiano-Castilho
  1

• Running ont data with pbsv produced an error

  #722 opened 24 days ago by coopsor
  1

• isoseq groupdedup for variant analysis

  #694 opened 5 months ago by gneedle1
  3

• Request for improved pbmm2 error message around zipped references

  #709 opened 3 months ago by mrvollger
  5

• skera adapeter.fasta for kinnex single-cell sequencing: where to download?

  #719 opened 2 months ago by WeiCSong
  0

• FL_TPM

  #718 opened 2 months ago by ngs-seqer
  0

• Pigeon classify error: error loading reference annotations for reference; vector::reserve

  #715 opened 2 months ago by SidG13
  0

• Example Kinnex data set error 404

  #701 opened 2 months ago by FabianJetzinger
  3

• Isoseq collapse : collapsing extra 5p exons results in incorrect isoforms.

  #717 opened 2 months ago by Fougere87
  0

• Unable to rename biosamples with lima

  #716 opened 2 months ago by linley-sherin
  0

• Auto thread detection in pbmm2 too high on slurm HPC

  #707 opened 3 months ago by mrvollger
  3

• pbmerge - overlapping movie/zmw combination

  #700 opened 2 months ago by gevro
  2

• TRGT v1.0.0

  #702 opened 2 months ago by fo40225
  1

• Certain reads with missing methylation modification tags

  #704 opened 2 months ago by tobybaker
  3

• the number of reads pre and post running "isoseq refine"

  #708 opened 2 months ago by WQQIGDB
  4

• isoseq3 refine filters many reads

  #711 opened 2 months ago by KMbio43
  1

• pbmerge unable to merge BAM files from Sequel II and Revio

  #712 opened 2 months ago by afiyachida
  1

• LIMA --min-scoring-regions 1 in isoseq mode

  #713 opened 2 months ago by OliviaDIVALENTIN
  1

• [pbccs/pbtk] Simulating low coverage hifi read for pipeline validation

  #714 opened 2 months ago by lok27395
  1

• pbfusion panicked at CIGAR

  #710 opened 3 months ago by biyang-bioinfo
  2

• Compatability with VACmap

  #706 opened 3 months ago by jamesc99
  0

• CRAM support for more tools

  #699 opened 3 months ago by mrvollger
  1

• [pbfusion] Error from visualize_fusion.py

  #705 opened 3 months ago by dbswls0322
  1

• How do I control

  #703 opened 4 months ago by SethMagnusJarvis
  4

• lima ERROR: [pbcopper] alarm ERROR: cannot write to empty alarm filename

  #677 opened 5 months ago by kenneditodd
  13

• IsoPhase on MAS-Iso-seq data for haplotyping

  #690 opened 5 months ago by camelest
  2

• isoseq3 collapse stops with fatal error map::at

  #686 opened 5 months ago by jchariker
  3

• Isoseq3 cluster2 exits without error message

  #685 opened 5 months ago by sagnikbanerjee15
  2

• The *.flnc_count.txt output from isoseq collapse does not generate columns for multiple samples

  #676 opened 5 months ago by YanqingHuang01
  2

• Cannot download Iso-Seq example data

  #679 opened 5 months ago by ianyfchang
  2

• identify transcripts with polyA tails

  #689 opened 5 months ago by ZachLW
  1

• Iso-Seq Pigeon classify GTF error

  #698 opened 5 months ago by akulan1
  1

• Generate HiFi reads

  #687 opened 5 months ago by mariachiara-github
  1

• isoseq for scRNA: duplicate molecules are kept

  #691 opened 5 months ago by JiangyanYu
  1

• isoseq for scRNA: UMI with homopolymers are not removed

  #692 opened 5 months ago by JiangyanYu
  1

• What can I do only with .fastq reads?

  #693 opened 5 months ago by dudududu12138
  1

• lima not outputting enough ZMWs - issue with primers or primer choice?

  #695 opened 5 months ago by carla-hazelf
  1

• PBSV system requirements

  #697 opened 5 months ago by MKaandemir
  3

• isoseq correct is very sensitive for style of input

  #684 opened 5 months ago by chvandijk
  1

• Segmentation fault (core dumped) when installing ilma.

  #683 opened 5 months ago by JiaLonghao1997
  1

• pigeon classification doesn't work (Chinese Hamster)

  #682 opened 5 months ago by yesh1m
  5

• Lima failing to detect CCS data after Skera de-concatination & Bam2Fastq conversion

  #681 opened 5 months ago by roylejw
  1

• filter

  #680 opened 5 months ago by lva85
  1

• What's the difference of = and X cigar of pbmm2?

  #696 opened 5 months ago by leon945945
  3

• iso-seq reads and pbfusion

  #688 opened 6 months ago by mariachiara-github
  2

• Error while running Falcon

  #678 opened 7 months ago by ptamamang24
  1

• CL: Annotation of alignment classes

  #675 opened 7 months ago by mariachiara-github
  7