colocalization
There are 22 repositories under colocalization topic.
boxiangliu/locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
mmkim1210/GeneticsMakie.jl
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
xqwen/fastenloc
Colocalization analysis of genetic association signals
RajLabMSSM/echolocatoR
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
ropensci/colocr
An R package for conducting co-localization analysis. Edit
RajLabMSSM/catalogueR
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
alexiaales/SpotitPy
An automated tool for Object-based colocalization in fluorescence microscopy images.
RajLabMSSM/echoplot
echoverse module: Locus plot creation for fine-mapping and colocalization studies.
rsenft1/FISH-IHC-Colocalization-in-ImageJ
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
Scaramir/HD_colocalization
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
tomouellette/pgxdisease
Analyses for the publication titled "Integrating disease and drug-related phenotypes for improved identification of pharmacogenomic variants"
Zepeng-Mu/qqman
This is a fork from qqman package
BCMSLab/colocrart
Code for the PeerJ paper (colocr: an R package for conducting co-localization analysis on fluorescence microscopy images)
CBFLivUni/Epigenetics-OA-Risk-Human-Skeletal-Dev
Methylation and mqtl analysis of the developing knee
hwittich/Coloc
COMP483 - Computational Biology final project at Loyola University Chicago
Software-Engineering-BBSRC-Group-6/auto-coloc-gui
Image processing desktop GUI tool to automate colocalization analysis across multiple channels on a fluorescence image
strug-hub/UKBB_spirometry_on_COPD
Colocalization analysis of Meconium Ileus Genome-Wide Association Study (GWAS) (Gong et al., 2019) signal around SLC26A9 with spirometry association analysis in the UK Biobank and Spirometa Consortium (Shrine et., 2019) around the same region to elucidate whether there is a shared genetic contribution to disease
bencardoen/Colocalization.jl
Colocalization metrics and distances for images or their sparse representations.
christacaggiano/caviar
Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.
MahShaaban/colocr_app
A shiny app for conducting co-localization analysis.
theresaswayne/nuclei-overlap
ImageJ scripts for analyzing nuclei intensity and overlap in brain sections