compartmental-models
There are 50 repositories under compartmental-models topic.
ECheynet/SEIR
Generalized SEIR Epidemic Model (fitting and computation)
silpara/simulators
Simulators for Compartmental Models in Epidemiology
epispot/epispot
A tool for modeling infectious diseases.
ADicksonLab/OpenRXN
A free, open-source tool for modeling chemical reaction networks in Python
stur86/compyrtment
A simple Python library for compartment models
MarcelBeining/T2N
T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife 2017; 6:e26517
HopkinsIDD/flepiMoP
The Flexible Epidemic Modeling Pipeline
open-sir/open-sir
Python SIR-x model implementation
americocunhajr/CE-ABC
CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.
ekimetrics/pyepidemics
Open source epidemiological modeling in Python
mbkoltai/RSV-resurgence-model
Code for modeling RSV resurgence following contact restrictions
nicoloverardo/master-degree-thesis
Master thesis for the MSc in Data Science and Economics at Università degli Studi di Milano
ablacan/ml-ci
A machine learning method for confidence interval (CI) computation with specific application to Covid-19 forecast on 54 countries.
antononcube/ECMMon-R
Epidemiologic Compartmental Modeling Monad in R
canmod/macpan2
Rebuilding https://github.com/mac-theobio/McMasterPandemic/
Computer-Assisted-Clinical-Medicine/UMMPerfusion
Open Source Perfusion Analysis Plugin for OsiriX and Horos
egruttadauria98/Modelling-the-US-fentanyl-epidemic
This repo contains the final work of the Simulation and Modeling class, part of the MSc in Data Science and Business Analytics @ Bocconi University
marialonsogar/COVID-Dynamics-Model-Comparison
Comparative study of the main techniques used for COVID modeling where the information available is infected curve. The objective is to identify those univariate techniques that produce the best results, analyzing whether the more complex models are really able to provide better predictions.
Musca23/SIRVSD-model-with-age-groups
Implementation of a SIRVSD model with different age groups and heterogeneous contacts in Python for Computational Models for Complex Systems Course
Ritwik-Bhaduri/SEIR_misclassification-Delhi
Understanding dynamics of COVID-19 in Delhi, India, using compartmental model that incorporates Testing bias and Misclassification.
aprilyeah/Outbreak-Simulator
SIR and SIS Model of an Outbreak
Gilbert-Sobremisana/https-doi.org-10.1016-j.jtice.2023.105076
Exploring characteristics of value-added production of anthraquinones in rhubarb via fermentation: Compartmental modelling and molecular docking analysis
henryxsong/Coral-Reefsearchers
Effects of Overfishing on Coral Reef Ecosystems
JBris/beast2-docker
Docker and Apptainer setup for the BEAST 2 software
JBris/beast2-experiments
Experiments with the BEAST 2 software
Kevger/Epidemic-Simulations
Interactive epidemic simulations with compartmental models from SI to MSIER
LedaKatopodi/compartmental-models
COPASI Implementation of a 6-compartment SEIARD model for the simulation of the COVID-19 pandemic.
MicheleDiSabato/NN_LearningOfRstar_COVID19
Machine learning algorithms for the calibration of epidemiological compartmental models: application to the Italian COVID-19 outbreaks in Italy and to the newly developed SUIHTER model.
neurorishika/SEIR_QDPA-COVID_19
Code and Data for Gupta and Mohanta, et. al. (2020)
sepmein/cengceng
Infectious disease models implemented in python
BIOSECURE-EU/parametra
Modelling database
Borealis-BioModeling/aurora-pkpd
Open Python Web App for Pharmcological Modeling and Analysis
MI2YorkU/Rnaught
An R package and web application for estimating the basic reproduction number (R0) of infectious diseases.
danielvartan/sir
🦠🤒 Illustration of the SIR model