HopkinsIDD/flepiMoP

Issues

• Normalization enforces homogeneous mixing across all model strata except spatial patch

  #302 opened 4 days ago by twallema
  0

• Configure issue templates for flepiMoP repo?

  #258 opened a month ago by emprzy
  6

• [Bug]: `gempyor.statistics` Missing Documentation/Unit Tests

  #300 opened 7 days ago by TimothyWillard
  2

• Convert `as_random_distribution` To Use `scipy.stats` Distributions

  #290 opened 18 days ago by TimothyWillard
  1

• [Bug]: Specifying a transition proportional to a sum of states only uses one of states included in the sum

  #299 opened 9 days ago by twallema
  3

• Transitions get overwritten if there are multiple of the same source->destination transitions

  #297 opened 11 days ago by saraloo
  2

• [Bug]: Using disease state names 'I1' and 'I2' only works when `proportional_to` are equal to "source"

  #298 opened 6 days ago by twallema
  4

• [Bug]: Disease state given to gempyor in a `proportional_to` with length greater than one, it gets cut off at a length of one and is interpreted further without warning

  #301 opened 6 days ago by twallema
  2

• Improve Python Exception Readability/Consistency

  #281 opened 21 days ago by TimothyWillard
  1

• Using undefined parameter in a symbolic rate expression (transitions) slips thru input checks and results in uninformative error

  #294 opened 16 days ago by twallema
  0

• Remove `path_prefix` Argument From `Parameters` Class

  #275 opened a month ago by TimothyWillard
  2

• R inference error in calculating likelihood when data is missing/NA

  #286 opened 18 days ago by saraloo
  1

• utils.py class `ISO8601Date` method `.convert()` has potentially unused argument `view`

  #293 opened 17 days ago by emprzy
  0

• `TestRunId.test_get_run_id_default_timestamp` Time Dependent Test Failure

  #287 opened 18 days ago by TimothyWillard
  0

• Remove GitBook Deprecated/Old/Stub Pages

  #283 opened 19 days ago by TimothyWillard
  3

• Document, Test, Repair `gempyor.subpopulation_structure` Module

  #285 opened 18 days ago by TimothyWillard
  0

• Document, Test, Repair `gempyor.parameters` Module

  #276 opened 25 days ago by TimothyWillard
  2

• Add Python Code Linting For `gempyor`

  #279 opened 23 days ago by TimothyWillard
  0

• Aggregation error in R inference algorithm

  #272 opened 21 days ago by saraloo
  1

• Split Up "unit-tests" GitHub Action Into Multiple Actions

  #278 opened 23 days ago by TimothyWillard
  0

• Allow merging with only one reviewer with code owner

  #226 opened 3 months ago by jcblemai
  0

• Website upgrades

  #263 opened a month ago by jcblemai
  0

• Support Xarray In `gempyor.parameters.Parameters`

  #274 opened a month ago by TimothyWillard
  0

• Mobility model only applied if more than one disease state in `proportional_to`

  #265 opened a month ago by twallema
  1

• Document, Test, Deprecate/Migrate `gempyor.utils`

  #246 opened 2 months ago by TimothyWillard
  10

• Structure of simulation output is not generalizable to n-dimensional epi models (n subpopulations)

  #253 opened a month ago by twallema
  6

• Move hardcoded `percent_day_away=0.5` to config file

  #256 opened a month ago by twallema
  2

• Switch From Using Confuse to Pydantic For Config Parsing

  #254 opened a month ago by TimothyWillard
  4

• Model Output File Management Class For `gempyor`

  #257 opened a month ago by TimothyWillard
  2

• Integration of website/documentation/sample/code GitHub repos

  #230 opened a month ago by twallema
  2

• Error in inference_slot when the prefix is not "inference_all"

  #240 opened a month ago by saraloo
  0

• `gempyor.utils.rolling_mean_pad` Performance Improvements

  #248 opened a month ago by TimothyWillard
  2

• Missing `boto3` Dependency For `gempyor`

  #238 opened a month ago by TimothyWillard
  1

• Address Warnings Produced By `gempyor` Test Suite

  #244 opened 2 months ago by TimothyWillard
  4

• Configurable Post-Processing

  #235 opened 2 months ago by TimothyWillard
  1

• JSON Output Post-Processing Script For Use In Dashboards

  #237 opened 2 months ago by TimothyWillard
  0

• Reintroduce Dual Likelihood (Chimeric/Global) Parameter Inference To `gempyor`

  #236 opened 2 months ago by TimothyWillard
  0

• Missing dependencies for installation of necessary R packages on Ubuntu 22.04

  #231 opened 2 months ago by twallema
  5

• Place link to documentation "Running locally in a conda environment" in a more easily-noticeable location

  #232 opened 2 months ago by twallema
  0

• Complete The "Inference Model Output" Section In Gitbook Documentation

  #229 opened 3 months ago by TimothyWillard
  2

• sunset calls to create_seeding.R within inference

  #213 opened 4 months ago by alsnhll
  1

• Move the flepimop sample to the main repo under `examples/`, and make them run as integration test

  #221 opened 3 months ago by jcblemai
  1

• Quick Start Guide/Flepimop_sample and data_path section no longer supported

  #219 opened 3 months ago by jeffstazer
  4

• Write validation check on config

  #220 opened 3 months ago by saraloo
  4

• Build Round 18 Config

  #200 opened 3 months ago by shauntruelove
  0

• Decide on how to account for high risk population vacc

  #201 opened 4 months ago by shauntruelove
  2

• Define compartment structure

  #202 opened 4 months ago by shauntruelove
  3

• Support smoothing of modifiers

  #216 opened 4 months ago by jcblemai
  1

• Quick Start Guide - Inference run - ModuleNotFoundError: No module named 'gempyor'

  #214 opened 4 months ago by jeffstazer
  10

• Detect negative rate and give a nice error when that happens

  #215 opened 4 months ago by jcblemai
  0