consensus-sequences
There are 13 repositories under consensus-sequences topic.
yangao07/abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
jonas-fuchs/varVAMP
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
pughlab/ConsensusCruncher
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
AndreaGuarracino/WFPOA
An extension to the wavefront algorithm that generalizes it to work on directed acyclic sequence graphs
rpianezza/GenomeDelta
Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads
RIVM-bioinformatics/SARS2seq
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
RIVM-bioinformatics/ViroConstrictor
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
hivlab/sarscov2-variation
SARS-CoV-2 sequencing workflow
echenim/AvalancheConsensusProtocol
Avalanche Consensus is a consensus protocol that is scalable, robust, and decentralized. It combines features of both classical and Nakamoto consensus mechanisms to achieve high throughput, fast finality, and energy efficiency
sunnyosun/LINE-1-retrotransposon
Tools for analyzing LINE-1 elements
BCCDC-PHL/consensus-align-utr-trim
Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences