yangao07/abPOA

Issues

• optimum parameters for ONT reads

  #68 opened 2 months ago by asylvz
  6

• Remove low coverage bases from consensus sequence?

  #67 opened 2 months ago by jiaan-yu
  7

• Pre-built binary programme not compatiable between difference versions of CPUs?

  #55 opened 2 months ago by jiaan-yu
  5

• abPOA crashes with seeding enabled

  #66 opened 3 months ago by glennhickey
  11

• support mino acid sequences?

  #65 opened 3 months ago by CTForGitHub
  2

• Finish-off pushing wheels from CI

  #64 opened 4 months ago by cjw85
  0

• install make error

  #63 opened 4 months ago by JXAUDZF
  2

• Regression in v1.5.0

  #61 opened 5 months ago by glennhickey
  3

• Sequence-dependent, reproducible crash in pyabpoa when repeatedly instantiating `pyabpoa.msa_aligner`

  #60 opened 6 months ago by shenker
  9

• abPOA fails to capture difference in prefix

  #57 opened 6 months ago by TanyaDvorkina
  1

• `abPOA ` conda installer broken?

  #42 opened a year ago by Koen-vdl
  7

• Does not install on Mac M1

  #44 opened 6 months ago by iskandr
  8

• PyPI package does not install

  #41 opened 2 years ago by cjw85
  14

• cython is required at build time but not install time

  #56 opened 6 months ago by tillea
  2

• Feature request: allow passing phred scores in python interface

  #54 opened 8 months ago by shenker
  0

• Is FASTQ output format supported?

  #53 opened 8 months ago by jiaan-yu
  2

• Segmentation fault error

  #52 opened 10 months ago by Goatofmountain
  2

• Unstable behavior in local alignment mode on x64 linux, possibly due to uninitialized values

  #50 opened a year ago by ctsa
  3

• Expected behavior of the extension alignment mode.

  #49 opened a year ago by ctsa
  5

• Homopolymer indels not consistently aligned

  #48 opened a year ago by rlorigro
  6

• -S option for pyabpoa

  #47 opened a year ago by christopher-vollmers
  2

• Does not accept other characters aside from A, C, T, and G (DNA Sequence)

  #46 opened a year ago by kcjavier21
  2

• ERROR: Could not install packages due to an OSError: [Errno 2] No such file or directory: 'output.json'

  #43 opened a year ago by kcjavier21
  4

• Cython is already installed but I keep getting error

  #45 opened a year ago by kcjavier21
  17

• abPOA as a library -- adding nodes to the graph

  #28 opened a year ago by HopedWall
  8

• abpoa segfaults when building with sse4.1 but not avx2

  #26 opened 2 years ago by glennhickey
  8

• Is there any way to reduce memory consumption?

  #14 opened 4 years ago by glennhickey
  24

• make vs cmake

  #39 opened 2 years ago by ldenti
  2

• Change in abpoa_msa function signature

  #38 opened 2 years ago by adcosta17
  3

• abPOA puts big gap in middle of sequence

  #36 opened 2 years ago by glennhickey
  2

• abPOA user specifiable seeds

  #37 opened 2 years ago by benedictpaten
  6

• Align expanded sequences, trim them and then compute the consensus sequence

  #30 opened 3 years ago by AndreaGuarracino
  6

• Consensus coverage in diploid mode

  #29 opened 3 years ago by ldenti
  8

• progressive mode does not work with seeding

  #35 opened 2 years ago by glennhickey
  12

• ARM support?

  #18 opened 2 years ago by glennhickey
  18

• make install using prefix does not set rpath

  #33 opened 2 years ago by EricDeveaud
  1

• header installation :: bad location

  #32 opened 2 years ago by EricDeveaud
  1

• Segmentation fault and mis-alignment issue

  #10 opened 3 years ago by mprous1
  3

• potential issue when aligning more than 1024 sequences (v1.2.4)

  #24 opened 3 years ago by ekg
  5

• link to manuscript is broken

  #27 opened 3 years ago by zztin
  1

• Can't install versions later than 1.0.2 using pip on Ubuntu 20.04 LTS in Docker

  #23 opened 3 years ago by hcstubbe
  4

• abPOA seems unstable with HOX scoring matrix

  #22 opened 3 years ago by glennhickey
  8

• Feature request: Allow specification of full scoring matrix

  #20 opened 3 years ago by glennhickey
  6

• Option to switch off logging messages

  #21 opened 3 years ago by glennhickey
  4

• pip install fails on multiple machines

  #19 opened 3 years ago by christopher-vollmers
  3

• MSA to GFA

  #17 opened 3 years ago by dbrami
  8

• Incremental update of the graph

  #16 opened 3 years ago by huguesrichard
  8

• Error in logic for read ID labeling at source node

  #15 opened 4 years ago by NatPRoach
  5

• [simd_abpoa_align_sequence_to_subgraph1] Error in cg_backtrack. (4)

  #9 opened 4 years ago by ekg
  17

• Error in cg_backtrack

  #7 opened 4 years ago by ekg
  4