copasi
There are 29 repositories under copasi topic.
copasi/COPASI
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
copasi/basico
A simplified python interface to COPASI.
spatial-model-editor/spatial-model-editor
Spatial bio-chemical reaction model editor and simulator
CiaranWelsh/pycotools3
A Python toolbox for COPASI
CiaranWelsh/pycotools
A Python Toolbox for COPASI
copasi/copasi-dependencies
Collection of OpenSource libraries to simplify COPASI build
jpahle/CoRC
The Copasi R connector, a high-level R API for Copasi
pmendes/COVID19
code and models to analyze COVID-19 data for Connecticut and other states
charlesrocabert/MetEvolSim
MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.
MetaSys-LISBP/acetate_regulation
Kinetic modeling of glucose and acetate metabolisms in E. coli
copasi/python-petab-importer
PEtab --> COPASI importer
GeoRouv/covid19-model
📈 Examination of the impact of COVID-19 spread by using a custom epidemiological model.
atiselsts/spacescanner
SpaceScanner: biological model optimization space scanner
biosimulators/Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
copasi/copasi-api
A more general, higher level, C++ API which can also be leveraged by other programming languages.
copasi/COPASI.js
Emscripten COPASI Javascript Bindings
copasi/python-copasi-testsuite
Python COPASI testing
LedaKatopodi/compartmental-models
COPASI Implementation of a 6-compartment SEIARD model for the simulation of the COVID-19 pandemic.
surajsept/pycoexp
A python package to integrate expression data into copasi models. It uses functionalities of python-copasi.
jpahle/DynamiCoRC
Dynamic Publication Media with the COPASI R Connector (CoRC)
MetaSys-LISBP/glucose_acetate_interplay
Supplementary information of Millard et al. 2023
MolecularBioinformatics/thermophilesNAD
Contains NAD biosynthesis model and python scripts to simulate the steady-state calculations.
fbergmann/harmony_scripts
Utility scripts written during HARMONY 2021
fbergmann/pyabc-copasi
Example Scripts for using COPASI simulations in pyABC
fbergmann/pyodide-copasi
Vue3 Project using Pyodide / basico and python-copasi emscripten
ModelDBRepository/151686
Stochastic model of the olfactory cilium transduction and adaptation (Antunes et al 2014)
Sheeran-X/Tonic_activity_in_C.elegans_O2-sensing_neurons
A quantitative model based on biochemical kinetics, repesenting the tonic Calcium activity and Calcium signalling in C. elegans Oxygen-sensing neurons, encoded in COPASI..
widdowquinn/SI_Pritchard_Birch_2014
Supplementary information/data for Pritchard & Birch (2014) doi:10.1111/mpp.12210