debruijn-graph
There are 18 repositories under debruijn-graph topic.
nygenome/lancet
Microassembly based somatic variant caller for NGS data
COMBINE-lab/pufferfish
An efficient index for the colored, compacted, de Bruijn graph
algbio/ggcat
Compacted and colored de Bruijn graph construction and querying
GATB/MindTheGap
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
navjindervirdee/Genome-Sequencing
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
hishamcse/Data-Structures-and-Algorithms-Specialization
This repository contains all the solutions of assignments, starter files and other materials related to this specialization.
Christina-hshi/SH-assembly
K-mer counting with low memory consumption enables de novo assembly of 106x human sequence data in 2.7 hours
hcdenbakker/mcOutbryk
SNP calling pipeline using mccortex
hishamcse/Simple_Genome_Assembler_PhiX174
The phi X 174 bacteriophage is a single-stranded DNA virus that infects Escherichia coli (E. Coli), and the first DNA-based genome to be sequenced. This work was completed by Fred Sanger and his team in 1977. This repository contains simple assembler, different components of it and various error correction techniques for assembling Phi X 174 bacteriophage
justinphan3110/DeBruijn-Card-Trick
:black_joker: creating a cool magic trick with de Bruijn arbitrary sequences
acvill/nodeSeqs
Shell script for extracting sequences from high-degree nodes in metagenomic assembly graphs
ericniso/hague
Project for the course of Elementi di Bioinformatica AY 2017/2018
ft-abhx/De-Bruijn-Graph-Assembly
String re-construction using the concepts of de Bruijn graph and Eulerian path.
riccardo-nigrelli/DynaDBG
PoC - De Bruijn graph with PGMIndex
jermp/UST
A fork of the original https://github.com/medvedevgroup/UST tool.
joaomota59/bioInformatica
Programas usados em BioInformática
kalyaniasthana/GenomeSequencing_BioinformaticsII
Coding problems from course 2 of the Bioinformatics specialization
zhongyuchen/genome-assembly
Assemble genomes with de Bruijn graph