algbio/ggcat

Issues

• Adding GGCAT to Bioconda

  #48 opened 4 months ago by karel-brinda
  2

• please tag a release

  #53 opened 2 months ago by EricDeveaud
  0

• Panic on assertion `left == right` failed while using the -c flag

  #52 opened 2 months ago by yoann-dufresne
  1

• WARNING: No newline at ending of file 'nonewline.fasta' behavior

  #50 opened 3 months ago by tmaklin
  2

• Plans to generate a GFA?

  #20 opened 2 years ago by rlorigro
  2

• compiling error?

  #51 opened 3 months ago by jianshu93
  2

• Which kmer-counter is actually used when building the graph?

  #49 opened 3 months ago by Blekin
  2

• is there a way to get the kmer counts of the kmers in the produced unitigs?

  #21 opened 2 years ago by shokrof
  1

• Issues with -d and -c flags (ggcat doesn't find sample in large color_mapping.in file)

  #47 opened 6 months ago by CamilaDuitama
  1

• Error 68 : Unfinished stream

  #42 opened 8 months ago by adamant-pwn
  2

• GGCAT keeps panicking about too many open files

  #25 opened a year ago by iosfwd
  1

• Interaction between `-m 0` and `--prefer-memory` causes a crash

  #36 opened 7 months ago by tmaklin
  1

• access datasets of origin

  #46 opened 7 months ago by kamimrcht
  2

• Problem with GGCAT when using 32 threads

  #45 opened 8 months ago by khodor14
  1

• GGCAT API crash when building many graphs in memory from the same instance

  #40 opened 8 months ago by tmaklin
  2

• Is there any way to dump the whole colormap in a readable file ?

  #39 opened 8 months ago by fingels
  2

• Same flag `-f` for both `--forward-only` and `--colored-query-output-format` options in queries

  #43 opened 8 months ago by fingels
  1

• GGCAT installation fails when compiling ggcat-api

  #41 opened 9 months ago by TimRouze
  2

• Using ggcat-api in an external Rust project fails to build without including `dynamic-dispatch-proc-macro` in Cargo.toml

  #38 opened 10 months ago by tmaklin
  3

• Using nightly Rust is problematic

  #27 opened 10 months ago by jnalanko
  11

• Installation from scratch fail with file examples

  #37 opened 10 months ago by fingels
  2

• [Request] Can you provide binaries?

  #35 opened a year ago by enricorox
  0

• Graph format issue (?)

  #16 opened 2 years ago by pierrepeterlongo
  3

• Coloring options for an input file list

  #17 opened 2 years ago by tmaklin
  4

• Build fails with `error[E0635]: unknown feature proc_macro_span_shrink`

  #31 opened a year ago by tmaklin
  1

• Error compiling using latest rust version

  #26 opened a year ago by rickbeeloo
  2

• different runs return different number of unitigs and distinct color subsets

  #24 opened a year ago by jermp
  6

• Compilation failed with error: `use of unstable library feature 'int_log'`

  #19 opened 2 years ago by rlorigro
  1

• Deadlock during construction?

  #18 opened 2 years ago by jnalanko
  0

• Query index shifting

  #14 opened 2 years ago by Guilucand
  0

• Error message: index out of bounds: the len is 10833 but the index is 48737

  #10 opened 2 years ago by jnalanko
  1

• query jsonl output generates bad keys

  #8 opened 2 years ago by snystrom
  0

• Color set -> color class compression

  #3 opened 2 years ago by rob-p
  2

• code: 24, kind: Uncategorized, message: "Too many open files"

  #2 opened 2 years ago by jnalanko
  2

• installation not working

  #1 opened 2 years ago by marade
  2