pierrepeterlongo

alg_2020

b2s_doc

back to sequences documentation

back_to_sequences

benchmphf

Benchmark of two minimal perfect hash libraries (phf, emphf)

commet

Comparing and combining multiple metagenomic datasets

kmer2sequences

Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.

kmers_ebame-9

kmindex_benchmarks

kmtricks_benchmarks

quasi_dictionary

Data structure indexing key-values with controled false positive rate and with low time and memory impacts

pierrepeterlongo/back_to_sequences

pierrepeterlongo/kmer2sequences

Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.

pierrepeterlongo/commet

Comparing and combining multiple metagenomic datasets

pierrepeterlongo/quasi_dictionary

Data structure indexing key-values with controled false positive rate and with low time and memory impacts

pierrepeterlongo/kmers_ebame-9

pierrepeterlongo/kmindex_benchmarks

pierrepeterlongo/kmtricks_benchmarks

pierrepeterlongo/alg_2020

pierrepeterlongo/b2s_doc

back to sequences documentation

pierrepeterlongo/bloomtest

Intern candidate test

pierrepeterlongo/BRAW

Box of not RelAted Work

pierrepeterlongo/c-plus-plus-serializer

A minimal C++11 header only serializer. Can serialize basic types, strings, containers, maps and custom classes. No suppprt yet for pointer types.

pierrepeterlongo/CARNAC-LR

pierrepeterlongo/DiscoSnp

DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.

pierrepeterlongo/div_labri_fall2019

pierrepeterlongo/fulgor

A fast and compact k-mer index for large-scale matching and color queries.

pierrepeterlongo/haploSim

Simulate haplotypes according to a random markovian chain along a binary evolutionnary tree and generate metagenomic illumina data from a random admixture of simulated haplotypes

pierrepeterlongo/kff-cpp-api

A C++ API to read and write kff files

pierrepeterlongo/kff-reference

Contains the description of a file format to store kmers and associated values

pierrepeterlongo/kmer_counter_per_read

pierrepeterlongo/logan-backend

pierrepeterlongo/Mash

Fast genome and metagenome distance estimation using MinHash

pierrepeterlongo/ntCard

Estimating k-mer coverage histogram of genomics data

pierrepeterlongo/PAC

pierrepeterlongo/py-upset

A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

pierrepeterlongo/strainberry

Automated strain separation of low-complexity metagenomes

pierrepeterlongo/StrainFLAIR

pierrepeterlongo/tara_kmer_profiles

pierrepeterlongo/UpSetPlot

Draw UpSet plots with Matplotlib

pierrepeterlongo/vg

tools for working with genome variation graphs