pierrepeterlongo/StrainFLAIR

metacatalogue

TODO: Global description - include figure of the modules

Dependencies

• prodigal
• minimap2.
• seqwish.
• vg.

Create an environnement for all the dependencies: conda create -p env_metacatalogue prodigal=2.6.3 seqwish=0.4.1 minimap2=2.17 vg=1.25.0 conda activate env_metacatalogue

Module descriptions

Describe here all modules

Module: detect genes from each input sequence

TODO: few words and example

Module: cluster obtained genes

TODO

...

Full indexation and query example

TODO

License

TODO

Contact

Kevin Da Silva Kevin.Da-Silva@inria.fr