deepvariant
There are 8 repositories under deepvariant topic.
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
atgenomix/deepvariant-on-spark
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
abs-tudelft/variant-calling-at-scale
Scalable and High Performance Variant Calling on Cluster Environments
NCI-CGR/GEMSCAN
Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
nikostr/dna-seq-deepvariant-glnexus-variant-calling
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
OrangeGenomix/spark-deepvariant-examples
Notebooks and examples for DeepVariant on Spark project.
GeneMAP-Research/genemapngs
Workflows for whole-genome/exome sequencing data analysis
saresend/deepvariant-challenge
A small repo that eases use of google's deepvariant with GWA metastudies about hypertension