drop-seq

There are 7 repositories under drop-seq topic.

  • Hoohm/dropSeqPipe

    A SingleCell RNASeq pre-processing snakemake workflow

    Language:Python14789547

  • nunofonseca/fastq_utils

    Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

    Language:C3451416

  • CTR-BFX/2018_Bacon_Charnock-Jones

    Bacon, W.A., Hamilton, R.S., Yu, Z., Kieckbusch, J., Hawkes, D., Krzak, A., Abell, C., Colucci, F. & Charnock-Jones, D.S. (2018) Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Front. Immunol., 9:2523 https://doi.org/10.3389/fimmu.2018.02523

    Language:R5104

  • sirusb/2CLike_analysis

    Some of the mapping and normalization scripts used in our NCB paper PMID:31209294

    Language:Groovy4101

  • seb-mueller/simulate-rnaseq-reads

    Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)

    Language:Python3101

  • martinholub/DroNc-seq

    Workflow for data analysis of DroNc-seq Data

    Language:HTML2220

  • JulianSpagnuolo/adtseq

    adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data

    Language:C++1100