Issues
- 0
Query regarding ratio in config.yaml
#104 opened by rjg2186 - 0
multiple cell barcodes
#121 opened by ayyildizd - 0
Error at perl locate
#118 opened by amufaamo - 4
SyntaxError in line 7 of Snakefile
#117 opened by amufaamo - 0
Error in rule repair
#116 opened by Eigertje - 2
Unsupported pickle protocol 5 in repair_barcodes.py
#115 opened by PGuen - 0
Also a problem with ViolinPlot
#114 opened by ljouneau - 5
- 0
create_star_index:
#112 opened by jkubis96 - 1
Less detected lncRNA
#111 opened by YOU-k - 2
Arabidopsis annotation missing transcipt_name
#109 opened by vuzun - 0
CreateCondaEnvironmentException: Could not create conda environment from (env).yaml
#110 opened by dgithub208 - 10
Issue with fastqc.smk
#108 opened by rjg2186 - 3
.snakemake/scripts folder is empty
#80 opened by MarleyCodes - 1
what strategy is applied to select CB
#107 opened by YOU-k - 1
Running dropSeqPIpe on 10X data
#106 opened by suminwei2772 - 13
help undestanding output
#103 opened by RichardCorbett - 9
First test with Dolomite Nadia data
#101 opened by RichardCorbett - 7
violin plot fail
#83 opened by terooatt - 0
10X split by oligos
#105 opened by klevdiamanti - 2
10x v2 filter part in config.yaml
#100 opened by YOU-k - 9
unable to run conda as standalone application
#102 opened by suminwei2772 - 3
Problem running the new version
#99 opened by manarai - 1
NH tag not found in BAM file
#98 opened by abmmki - 1
How are R1 reads filtered
#88 opened by seb-mueller - 2
No rule to produce meta
#85 opened by abmmki - 8
Genome not found, Picard's command line syntax is changing, violing plot not generated, expression.tsv not generated
#84 opened by abmmki - 2
KeyError for 'barcode-whitelist'
#81 opened by abmmki - 4
- 7
Error in rule MergeBamAlignment - Read from mapped file is missing in reference fastq file!
#69 opened by dylkot - 2
sircel integration?
#74 opened by colindaven - 1
Problems when runing from conda env
#90 opened by mcjmigdal - 2
Locus extraction for Introns
#87 opened by JaydeepBhat - 2
Another type of violin plot failure
#89 opened by Hofphi - 6
Problem creating refFlat
#78 opened by Hofphi - 2
- 3
limitGenomeGenerateRAM=31000000000
#82 opened by abmmki - 4
- 6
- 4
- 6
- 8
violin_plot
#71 opened by manarai - 14
errors in CreateSequenceDictionary and ConvertToRefFlat only when run through snakemake
#68 opened by dylkot - 7
Error in set in up the pipe and running it
#70 opened by manarai - 9
Config.yaml error DropSeqPipe v0.4
#67 opened by Hofphi - 6
Create_star_index failing
#66 opened by Hofphi - 19
R package problem, plotting error
#65 opened by Hofphi - 2
Consider a minimal repeated tutorial
#64 opened by Puriney - 3
- 4
I can not find the jar directory! help!!!
#62 opened by Jun-Lizst