Pinned Repositories
CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
pandoc_resume
Paul Fenwick's Resume
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
sib-days-single-cell
Files related to the single cell workshop given at the sib-days 2018
simulate-rnaseq-reads
Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)
Hoohm's Repositories
Hoohm/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
Hoohm/CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
Hoohm/pandoc_resume
Paul Fenwick's Resume
Hoohm/sib-days-single-cell
Files related to the single cell workshop given at the sib-days 2018
Hoohm/simulate-rnaseq-reads
Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)
Hoohm/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Hoohm/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Hoohm/Beer_ITS_analysis
BeerDeCoded first results using ITS
Hoohm/bio_practical
Tutorial script for practical course.
Hoohm/BRB-seqTools
Suite of tools for processing BRB-seq data
Hoohm/cellrouter
Reconstruction of complex single-cell trajectories using CellRouter
Hoohm/citeSeqPipe
Pipeline for CITE seq data
Hoohm/clasp-action
This action uses clasp to push or deploy to Google Apps Script.
Hoohm/cryptotaxsweden
Script for generating a tax report for cryptocurrency trading which can be sent to the Swedish tax authorities.
Hoohm/ethodemos
Hoohm/hoohm.github.io
Build a Jekyll blog in minutes, without touching the command line.
Hoohm/ideal_docker
Docker repo for the Ideal project https://github.com/federicomarini/ideal/
Hoohm/materials
Devoxx4Kids Workshop Materials
Hoohm/pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
Hoohm/polars
Fast multi-threaded, hybrid-out-of-core query engine focussing on DataFrame front-ends
Hoohm/PVQtools
Hoohm/rts-forum-diarization
Hoohm/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
Hoohm/scLVM
scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.
Hoohm/scngs-test-data
A workflow for creating small NGS test data sets, useful for continuous integration.
Hoohm/seurat
R toolkit for single cell genomics
Hoohm/shiny
Hoohm/shinyforms
📝 Easily create questionnaire-type forms with Shiny
Hoohm/SIB_2020_Workshop
R tutorial for SIB days 2020 Spatial workshop
Hoohm/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets