Issues
- 0
- 0
Unable to locate temp file while merging results
#187 opened by xmi215 - 2
Running Cite-Seq-count with next GEM protocol
#181 opened by yeroslaviz - 2
Allow to split fastq or get list of readID per cell
#184 opened by lldelisle - 1
Pandas error after correcting UMIs
#183 opened by ejohnson643 - 1
Include path to tag file in run report
#179 opened by johnyaku - 5
ValueError: columns cannot be a set
#172 opened by jamesboot - 11
Cell Hashing on Multiome samples
#174 opened by bassanio - 1
- 8
method keeps looking for whitelist when not provided.
#176 opened by naila53 - 2
- 3
- 8
CITE-seq-Count for multimodal data
#166 opened by YingzhengXu - 0
100% unmapped
#177 opened by yls2g13 - 2
- 0
Code for running multiple lanes
#171 opened by leeanapeters - 18
Percentage unmapped: 100
#167 opened by sopenaml - 2
- 2
Complex whitelist
#168 opened by alanaleah89 - 10
error running cite-seq-count
#150 opened by fouerghi - 4
running with totalseqB
#158 opened by naila53 - 2
Could you clarify internal QC in CITE-seq-Count?
#141 opened by marianaql - 2
Issue with No module named 'Levenshtein'
#164 opened by Lopiniatre - 2
different results each the CITE-seq count is run
#165 opened by colin986 - 1
Max memory limit when running CITE-seq-Count
#163 opened by molybdenumt - 9
CITE-seq-Count 100% unmapped
#161 opened by carbycrab - 2
Low overlap between cell barcodes and hashtag barcodes
#159 opened by mary77 - 4
Confusion about input arguments
#149 opened by YingzhengXu - 11
unmapped tags
#143 opened by leandrofmoreno - 2
- 1
Proper Saturation Rate Calculation
#160 opened by brindavjk - 0
Repeated MemoryError in each ForkPoolWorker
#162 opened by amber4mint - 2
Mapped/Unmapped Reads
#156 opened by jamesboot - 2
Error when option are set to --bc_collapsing_dist 0
#157 opened by rule-110 - 7
Running CITE-seq-Count on ASAP-seq
#154 opened by jhjlee - 3
- 1
barcode bug
#152 opened by craigamartens - 1
Filtering UMIs on read number
#151 opened by rule-110 - 5
- 7
Script won't complete
#145 opened by curtisd0886 - 4
- 9
- 1
Approximate the cell ranger unfiltered counts output?
#146 opened by bbimber - 4
- 2
few matched barcodes between HTO and RNA libraries after using V3 mapped whitelist
#139 opened by lb15 - 10
No out put generated
#135 opened by bony45 - 0
installation issue
#140 opened by hartlama - 7
- 0
CellRanger and CITE-seq Count
#138 opened by jamrute - 0
Sequencing Question
#137 opened by akornbergw