multiqc
There are 44 repositories under multiqc topic.
MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Hoohm/dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
jhuapl-bio/taxtriage
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
nf-core/hgtseq
A pipeline to investigate horizontal gene transfer from NGS data
MultiQC/test-data
Test data for MultiQC.
angelovangel/nxf-fastqc
A simple fastp-MultiQC nextflow pipeline
hanielcedraz/BAQCOM
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
MultiQC/example-plugin
A miniature example of a MultiQC plugin.
OtimusOne/AFPAP
AlphaFold-based Protein Analysis Pipeline
bixBeta/CFG
RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls
bixBeta/TReX
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex
becavin-lab/checkatlas
One liner tool to check the quality of your single-cell atlases.
gustaveroussy/rna-count-kallisto
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
MultiQC/MultiQC_NGI
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
MultiQC/website
Website files for MultiQC
tdayris-perso/wes-mapping-bwa-gatk
Map and post-process your bams for SNP calling
yejg2017/Sequence-Mapping-Bio
This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
IMS-Bio2Core-Facility/polya_liftover
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
kevin-wamae/snakemake-illumina-fastqc
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
msk-access/access_qc_generation
Generation Quality Controls Files for MSK-ACCESS
MultiQC/MultiQC_Clarity
MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
NorwegianVeterinaryInstitute/DemultiplexRawSequenceData
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
stevekm/nf-niceutils
nice utility methods for Nextflow pipelines
tdayris-perso/rna-count-salmon
Snakemake workflow for Salmon quantification and FastQC quality controls
anita-brzoza/university_projects
The repository contain directories of projects done during the bioinformatics degree program
CCBR/ASPEN
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets 🌲
isugifNF/RNAseq
RNAseq from fastq reads to gene counts/quantification
julianneyang/transcriptomicsonhoffman
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
MultiQC/api.multiqc.info
Code for basic MultiQC API service, providing run-time information about available updates.
tdayris/fair_bowtie2_mapping
Align reads over a reference genome, filter aligned-reads, and mark duplicates
umccr/dracarys
:dragon_face: DRAGEN workflow tidying :fire:
ineelhere/bioinformatics
Exploring Bioinformatics pipelines
mahesh-panchal/nextflow-quarto-multiqc-demo
Using Quarto within Nextflow to make a MultiQC report
mattgalbraith/multiqc-docker-singularity
Build Docker container for MultiQC and (optionally) convert to Apptainer/Singularity.
Sydney-Informatics-Hub/bamQC-nf
Report summary statistics relating to quality of bam files with Nextflow