CCBR/ASPEN

Issues

• warning during `git clone`: large files should be handled with `git lfs`

  #25 opened a year ago by kelly-sovacool
  4

• multiple versions for docs site

  #38 opened 2 months ago by kelly-sovacool
  0

• update citation file with Zenodo DOI after we cut the next release

  #30 opened 2 months ago by kelly-sovacool
  0

• set default singularity cache directory to `$WORKDIR/.singularity`

  #33 opened 2 months ago by kelly-sovacool
  5

• Contrast file is "required"

  #34 opened 7 months ago by kopardev
  0

• What to do if no MANIFEST

  #35 opened 7 months ago by kopardev
  0

• `runinfo.yaml` stat error

  #29 opened 7 months ago by kopardev
  0

• Need to add single-end option

  #31 opened 8 months ago by slsevilla
  1

• Check if jobby running correctly.

  #32 opened 10 months ago by kopardev
  0

• Add mouse support for Diff ATAC

  #18 opened 10 months ago by kopardev
  2

• ASAP: Deeptools peaks

  #7 opened 2 years ago by kopardev
  0

• tmp

  #10 opened a year ago by slsevilla
  0

• Diff error

  #19 opened a year ago by kopardev
  0

• Check replicate names are unique

  #9 opened a year ago by slsevilla
  0

• jaccard time out; max out on CPUS

  #14 opened 2 years ago by slsevilla
  1

• Add hs1 or T2T support

  #22 opened 10 months ago by kopardev
  0

• aggregate error in DiffATAC reported by Krithika

  #24 opened 10 months ago by kopardev
  1

• add Counts Matrix to workflow

  #17 opened a year ago by slsevilla
  4

• add contrast comparisons between peaks

  #15 opened a year ago by slsevilla
  5

• Change location of where the pipeline reads cluster.yaml

  #16 opened a year ago by slsevilla
  0

• Add Fastqscreen

  #4 opened a year ago by kopardev
  0

• "consensus" peaks are generated even when samples have only 1 replicate

  #21 opened a year ago by kopardev
  0

• read access not given for v.0.6.1

  #13 opened a year ago by slsevilla
  1

• Add code for fixed_width peak calling

  #6 opened 2 years ago by kopardev
  1

• sample error with samples > 39

  #8 opened 2 years ago by slsevilla
  4

• jaccard issue

  #5 opened 3 years ago by desireetillo
  1

• Add dyanmic partition based off of buyinnodes

  #1 opened 3 years ago by kopardev
  1

• copy scripts folder

  #2 opened 3 years ago by kopardev
  1

• copy cluster.json to WORKDIR

  #3 opened 3 years ago by kopardev
  1