macs2
There are 17 repositories under macs2 topic.
nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
ay-lab/ATACProc
ATAC-seq processing pipeline
ay-lab/ChIPLine
ChIP-seq analysis pipeline
HuntsmanCancerInstitute/MultiRepMacsChIPSeq
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
skchronicles/PeakCalling
Benchmarking ChIP-seq peak callers
uhkniazi/dismiss
DISMISS is an R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. It does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.
jianhong/genomictools
docker file for genomic tools
CCBR/ASPEN
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets
ChrisBotos/Binary_Search_MACS2_peaks_Annotation_file
First ever Python Project: Allinging the highest points of MACS2 peaks with positions around gene starts from a gff file.
monnieb92/PROseq_Intron_Intergenic_Enhancers
A pipeline to call intron and intergenic eRNAs from PRO-seq Data
OrangePomeranian/ChiP-seq
This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.
sebastian-gregoricchio/SPACCa
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
stjude-biohackathon/peakPeekeR
Peak calling optimization via real time results assessment and interactive parameter adjustment.
tdayris/fair_macs2_calling
Snakemake workflow used to call peaks with Macs2
hisplan/docker-macs2
Dockerized MACS2
metamaden/seq_answers
Sequencing data preprocessing